Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0293
(775 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 29 0.56
SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein Vps33|S... 29 0.98
SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr 1|... 28 1.3
SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr... 28 1.7
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom... 27 2.3
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 27 2.3
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 27 3.0
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch... 27 3.9
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 27 3.9
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo... 26 5.2
SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 6.9
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ... 26 6.9
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma... 26 6.9
SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyc... 26 6.9
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 6.9
SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation fac... 25 9.1
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po... 25 9.1
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 29.5 bits (63), Expect = 0.56
Identities = 31/131 (23%), Positives = 55/131 (41%), Gaps = 5/131 (3%)
Frame = +1
Query: 163 SVILNNNRNTNTGSDSRSTSDTELQTLSEELLRKDTNNAAKYITMDFQEKTTSQSKED-- 336
S I+ NN N S+S TS+ L + ELL A Y+ + S +
Sbjct: 433 SEIVRNNIYMNFLSESLETSNNNLTKVQAELLSTKMRQEACYLQLTASRTQCSDLSREVI 492
Query: 337 --KAPLPLLNISSAAWNIPTIEKIVPLLDNY-ERSTLVNEHVTPQERNEENAFMDAIMAT 507
A L LN + + N+P ++ LD Y + + +E + +E ++ +A+ T
Sbjct: 493 CLMAELDHLN-ETKSRNVPATVQVA--LDEYAQNPSTASETLVNKELANFSSIKEAVSKT 549
Query: 508 SVMRHLMNFLK 540
+R + L+
Sbjct: 550 LELREKVRALE 560
>SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein
Vps33|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 28.7 bits (61), Expect = 0.98
Identities = 30/113 (26%), Positives = 52/113 (46%), Gaps = 14/113 (12%)
Frame = +1
Query: 157 LPSVILNNNRNTNTG-------SDSRSTSDTELQTLSEELLRKDTNNAAKYITMDF---- 303
LPS ++N N +NTG S S S E++ ++ + + A+ ++ DF
Sbjct: 250 LPSSLVNRNEASNTGPMKKFSLSSSSSQITKEIRDINFNCIGPYLSKIARKLSSDFEGRR 309
Query: 304 QEKTTSQSKEDKAPLPLLNISSAAWNIPT--IEKIVP-LLDNYERSTLVNEHV 453
Q KT +Q ++ + L L + NI T E +V +NY + L +H+
Sbjct: 310 QAKTVNQIRDFVSKLGSLQSEHTSLNIHTGLAETLVQHTKNNYFQKLLQLQHL 362
>SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr
1|||Manual
Length = 927
Score = 28.3 bits (60), Expect = 1.3
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +1
Query: 211 RSTSDTELQTLSEELLRKDTNNAAKYITMDFQEKT 315
RST + EL L E + + N A + T DF EKT
Sbjct: 716 RSTFNEELVELFENMAVRSLNRAEYFCTGDFGEKT 750
>SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 568
Score = 27.9 bits (59), Expect = 1.7
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +1
Query: 205 DSRSTSDTELQTLSEELLRKDTNNAAKYITMDFQEKTTSQS 327
+ T+D +SEE KD +N+ + DF E T Q+
Sbjct: 508 NENETADASKDMISEEKSSKDADNSLEVAGKDFAEDGTEQT 548
>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1692
Score = 27.5 bits (58), Expect = 2.3
Identities = 35/137 (25%), Positives = 54/137 (39%), Gaps = 1/137 (0%)
Frame = +1
Query: 157 LPSVILNNNRNTNTGSDSRSTSDTELQTLSEEL-LRKDTNNAAKYITMDFQEKTTSQSKE 333
L ++ L+ N TN S S + L + +N +A +I F TT
Sbjct: 597 LETIDLSYNAITNIASLSECPKLNSINVACNLLSFYEYSNPSATFIDFSFCPLTTIDPAF 656
Query: 334 DKAPLPLLNISSAAWNIPTIEKIVPLLDNYERSTLVNEHVTPQERNEENAFMDAIMATSV 513
+ L +IS A K++ L D+ TLVN N + DAI A
Sbjct: 657 SYSNLVYFDISHA--------KLIGLKDSVIE-TLVNVETVKVNYNHFTSISDAISAMQN 707
Query: 514 MRHLMNFLKEKGYVTPD 564
+++L E YV+P+
Sbjct: 708 LKYLSCTNCEMSYVSPN 724
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 27.5 bits (58), Expect = 2.3
Identities = 27/101 (26%), Positives = 41/101 (40%), Gaps = 3/101 (2%)
Frame = +1
Query: 148 GPVLPSVILNNNRNTNTGSDSRSTSDTELQTLSEELLRKDTNNAAKYITMDFQEKTTSQS 327
G + S +L +NR T + S+ + L++ LLR K T Q KT
Sbjct: 45 GNYIASKLLESNRRTKGKKGNGKASNFQSMGLNQTLLRAIFKKGFKAPT-PIQRKTIPLL 103
Query: 328 KEDKAPLPLLNISS---AAWNIPTIEKIVPLLDNYERSTLV 441
E + + + S AA+ IP IE + L N L+
Sbjct: 104 LEGRDVVGMARTGSGKTAAFVIPMIEHLKSTLANSNTRALI 144
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 27.1 bits (57), Expect = 3.0
Identities = 17/64 (26%), Positives = 33/64 (51%)
Frame = +1
Query: 253 LLRKDTNNAAKYITMDFQEKTTSQSKEDKAPLPLLNISSAAWNIPTIEKIVPLLDNYERS 432
LL+K + A + ++KT SQ +E L NIS++++++ + I + DN
Sbjct: 395 LLKKTVLSLASTEQANKKQKTCSQIEELLLQAELANISASSFSLQLMVIITAISDNLTND 454
Query: 433 TLVN 444
L++
Sbjct: 455 DLLS 458
>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 867
Score = 26.6 bits (56), Expect = 3.9
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = +1
Query: 67 FSYSAMVSGSNKPTTLSVYTTPKPS--TRGPVL 159
F S SN P TL+ YTT PS +R P+L
Sbjct: 345 FDSSVTTVPSNSPATLNSYTTSVPSGMSRHPML 377
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 26.6 bits (56), Expect = 3.9
Identities = 15/54 (27%), Positives = 27/54 (50%)
Frame = +1
Query: 178 NNRNTNTGSDSRSTSDTELQTLSEELLRKDTNNAAKYITMDFQEKTTSQSKEDK 339
N + +T + +T TE LSE + D A+ +D ++ T + SKE++
Sbjct: 224 NQKKKSTKQNIEAT--TENDALSESISTPDIQKVAQSEDVDAEQDTVADSKEEE 275
>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1513
Score = 26.2 bits (55), Expect = 5.2
Identities = 16/48 (33%), Positives = 20/48 (41%)
Frame = +1
Query: 313 TTSQSKEDKAPLPLLNISSAAWNIPTIEKIVPLLDNYERSTLVNEHVT 456
T S K PL SS WN+ + P L NY S L + +T
Sbjct: 393 TIQSSLPSKEVFPLEKYSSEPWNLHNLPFENPCLFNYSFSDLSSLTIT 440
>SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 386
Score = 25.8 bits (54), Expect = 6.9
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +3
Query: 453 NATGTKRGKCVYGRHHGHKCYEAFNEFFERKRLCHTGS 566
N + K + V+GR H EA +RK+L H+ S
Sbjct: 22 NFSSNKSQRLVFGRKHKTAKLEAPRALIKRKQLSHSTS 59
>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1888
Score = 25.8 bits (54), Expect = 6.9
Identities = 14/64 (21%), Positives = 28/64 (43%)
Frame = +1
Query: 139 STRGPVLPSVILNNNRNTNTGSDSRSTSDTELQTLSEELLRKDTNNAAKYITMDFQEKTT 318
ST+ V LN N + + + + E + E+ +KD + A + DF+ +
Sbjct: 61 STKSSVSSLPELNRNVSFEKSDQNLAETKREEENKRTEVFKKDAEHEAVVVKRDFRPRRP 120
Query: 319 SQSK 330
Q++
Sbjct: 121 EQTR 124
>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 358
Score = 25.8 bits (54), Expect = 6.9
Identities = 18/53 (33%), Positives = 28/53 (52%)
Frame = +1
Query: 76 SAMVSGSNKPTTLSVYTTPKPSTRGPVLPSVILNNNRNTNTGSDSRSTSDTEL 234
S+++S S PTT +P P+T S IL+N+ ++ S S ST T +
Sbjct: 107 SSILSNSTIPTT-----SPVPTTSSTPTSSSILSNSTIPSSSSISASTITTTI 154
>SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1050
Score = 25.8 bits (54), Expect = 6.9
Identities = 15/57 (26%), Positives = 27/57 (47%)
Frame = -3
Query: 578 LCCLGSGVT*PFSFKKFIKCLITLVAMMASINAFSSFRSCGVTCSFTNVLLS*LSKS 408
LCCLGS + S F+ +++ +++ S F+ + FT + S L K+
Sbjct: 219 LCCLGSAIFAKASNALFVVIILSTISIPISSIFVHPFKDPSLLVHFTGLKWSTLMKN 275
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.8 bits (54), Expect = 6.9
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 7/83 (8%)
Frame = +1
Query: 94 SNKPTTLSVYTTPKPSTRGP------VLPSVILNNNRNTNTGSDSRSTSD-TELQTLSEE 252
SN T+ S +TP P+T P + S L++ N +T + STS TE++T S
Sbjct: 680 SNVTTSSSTVSTPPPTTSFPSTFTTSFITSSSLSSIPNNSTEVKTASTSSGTEIKTASTS 739
Query: 253 LLRKDTNNAAKYITMDFQEKTTS 321
+++++ Y TTS
Sbjct: 740 ---SGSSSSSSYTPASSTSTTTS 759
Score = 25.4 bits (53), Expect = 9.1
Identities = 23/68 (33%), Positives = 31/68 (45%)
Frame = +1
Query: 70 SYSAMVSGSNKPTTLSVYTTPKPSTRGPVLPSVILNNNRNTNTGSDSRSTSDTELQTLSE 249
S S + S S TT S P ++ PV P+V + +T+T STS T T S
Sbjct: 328 SSSPLPSTSTSCTT-STSIPPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSST--GTSSS 384
Query: 250 ELLRKDTN 273
LL T+
Sbjct: 385 PLLSTSTS 392
>SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation factor
CPSF-73 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 797
Score = 25.4 bits (53), Expect = 9.1
Identities = 15/64 (23%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Frame = +1
Query: 298 DFQEKTTSQSKEDKAPLPLLNISSAAWNIPTIEKIVPLLDN-----YERSTLVNEHVTPQ 462
D ++ + KE+K LP+LN + ++ + PLL Y R L+++ ++ +
Sbjct: 691 DGDKERNEEKKEEKETLPVLNALTLRSDLARAPRAAPLLVGNIRLAYLRKALLDQGISAE 750
Query: 463 ERNE 474
+ E
Sbjct: 751 LKGE 754
>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1159
Score = 25.4 bits (53), Expect = 9.1
Identities = 12/51 (23%), Positives = 25/51 (49%)
Frame = +1
Query: 235 QTLSEELLRKDTNNAAKYITMDFQEKTTSQSKEDKAPLPLLNISSAAWNIP 387
+T + L KDT + +++T++ E + P P I S+ +++P
Sbjct: 428 KTFEHQPLSKDTEAPKSQFSSSPTKESTTRKSEVEPPSPSKEIKSSHFSVP 478
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.315 0.129 0.367
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,250,599
Number of Sequences: 5004
Number of extensions: 71359
Number of successful extensions: 274
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 255
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 274
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
- SilkBase 1999-2023 -