Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0293
(775 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0672 + 27164628-27164792,27164903-27164965,27165298-271654... 81 1e-15
03_06_0517 + 34466743-34466879,34468478-34468588,34468997-344690... 32 0.44
01_05_0541 - 23078460-23078597,23078745-23078903,23079264-230793... 32 0.58
06_03_1283 - 28957729-28959258,28959354-28959550,28959824-289600... 31 1.0
04_03_0057 + 10407402-10407452,10407540-10407782,10408506-104089... 30 2.3
07_03_0697 + 20759176-20759817,20760592-20760708,20761422-207616... 29 3.1
01_06_0873 + 32617428-32617532,32618166-32618234,32619195-326193... 29 3.1
03_02_0619 + 9904405-9904586,9905315-9906764,9907320-9907509,990... 29 5.4
08_02_0192 + 14048828-14048873,14048960-14051169 28 7.2
07_03_0563 - 19542116-19542217,19542631-19542712,19543823-195445... 28 7.2
02_04_0585 - 24088344-24089366,24089833-24090075,24090305-240906... 28 7.2
05_01_0291 - 2274587-2274676,2274871-2275076,2275638-2275719,227... 28 9.5
>04_04_0672 +
27164628-27164792,27164903-27164965,27165298-27165408,
27165454-27165537,27166081-27166194,27166901-27167494,
27167604-27167675,27167761-27167997
Length = 479
Score = 81.0 bits (191), Expect = 1e-15
Identities = 40/100 (40%), Positives = 56/100 (56%)
Frame = +1
Query: 385 PTIEKIVPLLDNYERSTLVNEHVTPQERNEENAFMDAIMATSVMRHLMNFLKEKGYVTPD 564
PT + LLDNY E VT Q+++EE AF++ I T+ +++L +L KG + D
Sbjct: 272 PTYSRFCALLDNYNPHQGYKEVVTQQDKHEEVAFIEEIARTAPIKYLHRYLVLKGVASQD 331
Query: 565 PRQQRDFVKQLWFSLYSRGKGKISSSGFEHIFVSELKNGR 684
+ + LWF LY RG SSS FEH+FV E+K R
Sbjct: 332 YEDFKRMLTSLWFDLYGRGGSSSSSSAFEHVFVGEIKGRR 371
>03_06_0517 +
34466743-34466879,34468478-34468588,34468997-34469079,
34469287-34469404,34469503-34469714,34470167-34470651,
34470731-34470801,34470898-34470955,34471161-34471192,
34471193-34471449,34471820-34471974,34472353-34472636,
34472725-34472842,34473574-34473756,34473848-34474162
Length = 872
Score = 32.3 bits (70), Expect = 0.44
Identities = 36/136 (26%), Positives = 65/136 (47%), Gaps = 3/136 (2%)
Frame = +1
Query: 133 KP-STRGPVLPSVILNNNRNTNTGSDSRSTSDTELQT-LSEELLRKDT-NNAAKYITMDF 303
KP STRG V LNN +T+ G++S ++ TE + + LL+ D +N A D
Sbjct: 246 KPNSTRGQENMDV-LNNLNSTDAGNNSSLSTTTENASHVQRRLLQTDEKSNQAGSSETDA 304
Query: 304 QEKTTSQSKEDKAPLPLLNISSAAWNIPTIEKIVPLLDNYERSTLVNEHVTPQERNEENA 483
+ T+++ + PL + A++N+ + +P NY+ V+E + E +E
Sbjct: 305 SDTGTAKAATVENSEPLEADADASFNLFRDVEDLPDEYNYDYDDYVDETMWGDEDWKEQQ 364
Query: 484 FMDAIMATSVMRHLMN 531
A S+ H+++
Sbjct: 365 HEKAEDYVSIDAHILS 380
>01_05_0541 -
23078460-23078597,23078745-23078903,23079264-23079386,
23079839-23080363,23081240-23081421,23084977-23085072,
23085290-23085485
Length = 472
Score = 31.9 bits (69), Expect = 0.58
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +1
Query: 634 SSSGFEHIFVSELKNGRSFWST*LDLFFKGRSSEPTEL 747
+ S ++ ++ E+ N W DL F+G+ EPT++
Sbjct: 357 TKSAYKEVYKREISNAHQLWKARNDLKFQGKIKEPTQV 394
>06_03_1283 - 28957729-28959258,28959354-28959550,28959824-28960026,
28960097-28960424,28960524-28960661,28960765-28961020,
28961529-28961626,28963104-28963367,28964395-28964584
Length = 1067
Score = 31.1 bits (67), Expect = 1.0
Identities = 25/99 (25%), Positives = 35/99 (35%), Gaps = 1/99 (1%)
Frame = +3
Query: 270 KQCCQIYHDGLSRKNDITVERRQSPVAAAKYIISGMEYSNNRKNCPTLGQLRKKHVSK*T 449
K+CC H G K + V S K ++S E S + C H
Sbjct: 716 KKCCSSSHHGSHAKKNHGVSHHCSD-GPCKSMVSCKESSVAKNACHDHHHEHNHHEEP-- 772
Query: 450 CNATGTKRGKCVYGRHHGHK-CYEAFNEFFERKRLCHTG 563
+ + + C + HGH C E N+ K CH G
Sbjct: 773 AHKHSSNQHGC-HDHSHGHSNCKEPSNQLITNKHACHDG 810
>04_03_0057 +
10407402-10407452,10407540-10407782,10408506-10408976,
10409058-10409483,10409559-10409618,10409694-10409807,
10409888-10409956
Length = 477
Score = 29.9 bits (64), Expect = 2.3
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +1
Query: 202 SDSRSTSDTEL-QTLSEELLRKDTNNAAKYITMDFQEKTTSQSKEDKAPLP 351
+D T D + Q L EE + +D + AA ++ D EKT S S + +P P
Sbjct: 340 ADDLPTLDPSIEQALDEEEIEEDVDQAAAELS-DIGEKTPSASPKQTSPTP 389
>07_03_0697 +
20759176-20759817,20760592-20760708,20761422-20761696,
20761906-20762068,20762293-20762421,20762989-20763713,
20763853-20764081
Length = 759
Score = 29.5 bits (63), Expect = 3.1
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = +1
Query: 199 GSDSRSTSDTELQTLSEELLRKDTNNAAKYITMDFQEKTTSQSKEDK 339
G D T +TEL+ LS+ +L + NN K + QEK + K K
Sbjct: 500 GEDMEITFNTELEDLSKRILDRKVNN-EKTVWEKHQEKMKEKRKSRK 545
>01_06_0873 + 32617428-32617532,32618166-32618234,32619195-32619380,
32619687-32619776,32620389-32620462,32621149-32621260,
32621413-32621468,32621826-32621880,32621965-32622021,
32622696-32622797,32623467-32623547,32623756-32623808,
32625245-32625314,32626540-32626603,32627339-32627487,
32627564-32627719,32628011-32628108,32628763-32628847,
32628932-32628997,32629066-32629125,32629408-32629494,
32630307-32630360,32630538-32630576,32630651-32630779,
32630859-32630911,32630984-32631032,32632240-32632298,
32633111-32633259,32633338-32633492,32633719-32633847,
32633932-32634017,32634220-32634335,32634429-32634541,
32635335-32635458,32635540-32635658,32636289-32636490,
32636586-32636757,32637852-32638176,32638442-32638529,
32638970-32639059,32639169-32639370,32639681-32639705
Length = 1450
Score = 29.5 bits (63), Expect = 3.1
Identities = 20/69 (28%), Positives = 33/69 (47%)
Frame = +1
Query: 214 STSDTELQTLSEELLRKDTNNAAKYITMDFQEKTTSQSKEDKAPLPLLNISSAAWNIPTI 393
++ DT LQ +E+ + ++AA T F E++ + K N W I I
Sbjct: 1122 NSHDTPLQKQGKEM-HEQKSDAANGATHGFLERSHLNNSSTKMD----NAVGCGWGIMFI 1176
Query: 394 EKIVPLLDN 420
EK+VP++ N
Sbjct: 1177 EKLVPIVVN 1185
>03_02_0619 +
9904405-9904586,9905315-9906764,9907320-9907509,
9909578-9910164
Length = 802
Score = 28.7 bits (61), Expect = 5.4
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Frame = +1
Query: 544 KGYVTPDPRQ-QRDF---VKQLWFSLYSRGKGKISSSGFEHIFVSELKNGRSFWST*LDL 711
K + TPDP ++F ++Q FSL +RG+ + E + VS +K R +D
Sbjct: 254 KAFCTPDPSHINKNFRREMQQADFSLQNRGRVSPNLLDTEDVDVSRIKRERYLSRNAVDS 313
Query: 712 FFKGRSS 732
+G+ S
Sbjct: 314 LLEGKES 320
>08_02_0192 + 14048828-14048873,14048960-14051169
Length = 751
Score = 28.3 bits (60), Expect = 7.2
Identities = 18/63 (28%), Positives = 35/63 (55%)
Frame = +1
Query: 70 SYSAMVSGSNKPTTLSVYTTPKPSTRGPVLPSVILNNNRNTNTGSDSRSTSDTELQTLSE 249
SY+ ++SG N P++ + T + S G L S+ + ++++ S+SDTE +E
Sbjct: 649 SYNPLLSG-NVPSSGQLSTFDEQSFLGDPLLSLNVTAGSSSDSSPREFSSSDTEEHPTNE 707
Query: 250 ELL 258
E++
Sbjct: 708 EIM 710
>07_03_0563 -
19542116-19542217,19542631-19542712,19543823-19544595,
19545207-19545296,19545612-19545689,19546112-19546207,
19546285-19546365,19546587-19546787,19546875-19546967,
19547052-19547116,19547684-19547715,19548844-19548956
Length = 601
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +1
Query: 115 SVYTTPKPSTRGPVLPSVILNNNRNTNTGSDSRSTSDTELQT 240
S+ +P P T PVLPS L + RNT + R ++ ++Q+
Sbjct: 414 SILASPAPWTTAPVLPS--LASTRNTLVLKELRIANEVKVQS 453
>02_04_0585 -
24088344-24089366,24089833-24090075,24090305-24090655,
24090736-24090823,24091178-24091275,24091813-24092025,
24092150-24092245,24093124-24093195,24093909-24094067
Length = 780
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/62 (24%), Positives = 29/62 (46%)
Frame = +1
Query: 112 LSVYTTPKPSTRGPVLPSVILNNNRNTNTGSDSRSTSDTELQTLSEELLRKDTNNAAKYI 291
L + + +P + V+LNN + G+D+ + +L L +E+ R+D K
Sbjct: 273 LPSFPSEEPGGKEITFKRVLLNNCQEAFEGADNLRSEVNKLTGLDQEMERRDKERLVKLR 332
Query: 292 TM 297
T+
Sbjct: 333 TL 334
>05_01_0291 -
2274587-2274676,2274871-2275076,2275638-2275719,
2275948-2276064,2276489-2276751,2277548-2277620,
2278324-2278427,2278613-2278706
Length = 342
Score = 27.9 bits (59), Expect = 9.5
Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 5/89 (5%)
Frame = +1
Query: 196 TGSDSRSTSDTELQTLSEELLR-KDTNNAAKYITMDFQEKTTSQSKEDKAPLPLLNISSA 372
+GSD STSD + + + L R +++ A ++ TTS S+ + +
Sbjct: 249 SGSDEESTSDDDEEEAQKSLKRASNSSQEAPGSNLEITSDTTSSSRINSQTATIATTKGI 308
Query: 373 AWNIPTIEKI----VPLLDNYERSTLVNE 447
+ + P I+ V LD ST+ E
Sbjct: 309 SRSSPVIDMSNSTNVSELDRISNSTIAAE 337
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.315 0.129 0.367
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,808,232
Number of Sequences: 37544
Number of extensions: 414304
Number of successful extensions: 1058
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1028
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1057
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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