Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0293
         (775 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g40840.1 68418.m04958 cohesion family protein SYN2 (SYN2) ide...    31   1.1  
At1g68990.1 68414.m07895 DNA-directed RNA polymerase, mitochondr...    30   1.5  
At1g58200.2 68414.m06607 mechanosensitive ion channel domain-con...    29   2.6  
At1g58200.1 68414.m06606 mechanosensitive ion channel domain-con...    29   2.6  
At5g20430.1 68418.m02429 mob1/phocein family protein contains Pf...    29   4.5  
At5g25270.1 68418.m02996 expressed protein                             28   6.0  
At4g35270.1 68417.m05012 RWP-RK domain-containing protein simila...    28   7.9  
At4g27060.1 68417.m03891 expressed protein                             28   7.9  

>At5g40840.1 68418.m04958 cohesion family protein SYN2 (SYN2)
           identical to cohesion family protein SYN2 [Arabidopsis
           thaliana] GI:12006360; supporting cDNA
           gi|12006359|gb|AF281154.1|AF281154
          Length = 809

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 19/65 (29%), Positives = 30/65 (46%)
 Frame = +1

Query: 160 PSVILNNNRNTNTGSDSRSTSDTELQTLSEELLRKDTNNAAKYITMDFQEKTTSQSKEDK 339
           PSV    NR+ +T   +   +  E Q L +E     T N AK++   F E+   + +E  
Sbjct: 697 PSVYYVENRDLDTILMNDEVNADERQDLQQETWSSRTRNVAKFLEKTFLEQREREEEEKV 756

Query: 340 APLPL 354
           + L L
Sbjct: 757 SLLQL 761


>At1g68990.1 68414.m07895 DNA-directed RNA polymerase, mitochondrial
           (RPOMT) identical to SP|P92969 DNA-directed RNA
           polymerase, mitochondrial precursor (EC 2.7.7.6)
           {Arabidopsis thaliana}
          Length = 976

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = +1

Query: 193 NTGSDSRSTSDTELQTLSEELLRKDTNNAAKYITMDFQEKTTSQSK 330
           N  + +  T +TE + +SEE++ K+T  A K +T+  ++    Q K
Sbjct: 265 NKKNATDKTINTEAENVSEEIVAKETEKARKQVTVLMEKNKLRQVK 310


>At1g58200.2 68414.m06607 mechanosensitive ion channel
           domain-containing protein / MS ion channel
           domain-containing protein contains Pfam profile PF00924:
           Mechanosensitive ion channel
          Length = 678

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
 Frame = +1

Query: 172 LNNNRNTNTGSDSRSTSDTELQTLSEELLRK---DTNNAAKYITMDFQEKTTSQSKEDKA 342
           L +N NT T   S STSD  +   SEE  ++   D + A K    D  E T  Q+ + KA
Sbjct: 555 LGSNSNTGTKGSSTSTSDQPVAQKSEEKKKESVGDPHKAEKDEVSD-DEATIEQTLKSKA 613


>At1g58200.1 68414.m06606 mechanosensitive ion channel
           domain-containing protein / MS ion channel
           domain-containing protein contains Pfam profile PF00924:
           Mechanosensitive ion channel
          Length = 678

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
 Frame = +1

Query: 172 LNNNRNTNTGSDSRSTSDTELQTLSEELLRK---DTNNAAKYITMDFQEKTTSQSKEDKA 342
           L +N NT T   S STSD  +   SEE  ++   D + A K    D  E T  Q+ + KA
Sbjct: 555 LGSNSNTGTKGSSTSTSDQPVAQKSEEKKKESVGDPHKAEKDEVSD-DEATIEQTLKSKA 613


>At5g20430.1 68418.m02429 mob1/phocein family protein contains Pfam
           profile: PF03637 mob1/phocein family
          Length = 122

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -1

Query: 484 THFPRFVPVALHVHLLTCFFRNCPRVGQFFLL 389
           +HFP+ V +    HL TCF R    V +F L+
Sbjct: 73  SHFPKIVTLNEQAHLNTCFHRYLLFVSEFQLV 104


>At5g25270.1 68418.m02996 expressed protein
          Length = 540

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = +1

Query: 70  SYSAMVSGSNKPTTLSVYTTPKPSTRGPVLP 162
           S +    G   P+T S  T P PSTRGP  P
Sbjct: 318 STTQQTPGQTIPSTPSSTTDPAPSTRGPSEP 348


>At4g35270.1 68417.m05012 RWP-RK domain-containing protein similar
           to nodule inception protein GI:6448579 from (Lotus
           japonicus); contains Pfam profile: PF02042 RWP-RK domain
          Length = 974

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +1

Query: 571 QQRDFVKQLWFSLYSRGKGKISSSGFEHIF 660
           Q +DF+ Q+W  +   GK  +++S   H F
Sbjct: 169 QDKDFLIQIWLPIQQEGKNFLTTSEQPHFF 198


>At4g27060.1 68417.m03891 expressed protein
          Length = 864

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 20/64 (31%), Positives = 27/64 (42%)
 Frame = -2

Query: 738 RFAASSFEK*IQLCRPETSPIF*FRYKYMFKS*TTDFSFSPRVQTKPELLYKISLLSRIR 559
           + A    EK IQ   PET P        MF +   D    P+   K E L+ +S +  + 
Sbjct: 60  QIAVEDLEKTIQSLTPETLP--------MFLNCLYDSCSDPKPAVKKECLHLLSYVCSLH 111

Query: 558 CDIT 547
           CD T
Sbjct: 112 CDST 115


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.315    0.129    0.367 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,534,584
Number of Sequences: 28952
Number of extensions: 357181
Number of successful extensions: 1170
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1168
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1726528800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)