Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0291
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G8.10c ||SPAC3A12.01c|beclin family protein|Schizosaccharo...    28   1.5  
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    28   1.5  
SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor Crm1|...    27   2.6  
SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyce...    26   4.5  
SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy...    26   6.0  
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    25   7.9  

>SPAC20G8.10c ||SPAC3A12.01c|beclin family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 464

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 9/50 (18%), Positives = 26/50 (52%)
 Frame = -1

Query: 485 HQDPDLASGVQNVNALRVGIVTDAKVTWDRLSKLYHLLLGIFKAVSNEID 336
           + +P+    +  +N LR+G +   KV W  ++  + + + +   ++ ++D
Sbjct: 287 YSEPNGEGSIATINGLRLGRLPSQKVNWAEINAAWGMTVLLLDVLTEKLD 336


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
            subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = +1

Query: 208  LTAPVYCRPSASYSTVSQTNLS*ESLTPSLPGV-PSIPSQN-TSPSIS 345
            LT+P Y   S  YST      S  S +P+ P   P+ PS + TSPS S
Sbjct: 1553 LTSPSYSPSSPGYSTSPAYMPSSPSYSPTSPSYSPTSPSYSPTSPSYS 1600


>SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor
           Crm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1078

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = -1

Query: 479 DPDLASGVQNVNALRVGIVTD-AKVTWDRLSKLYHLLLGIFKAVSNEIDGLVFCDGILGT 303
           DP     + NV    V   T      + +++K Y  +LG++KAVS  I  +V   G + T
Sbjct: 682 DPQTVKILANVLKTNVAACTSIGSGFYPQIAKNYVDMLGLYKAVSGLISEVVAAQGNIAT 741


>SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 469

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 29/113 (25%), Positives = 44/113 (38%)
 Frame = +3

Query: 174 FGLCRQEGQLKAYGAGLLSSFGELQYCLSDKPELREFDPESTGGTKYPITEYQPVYFVAN 353
           F  C++EG   A    L +    L  C+ DK  LRE      G  K P   +        
Sbjct: 131 FEKCKKEGTTDALKRALRNFGNSLGNCMYDKYYLRE-----VGKMKPPTYHFDSGDLFRK 185

Query: 354 SFEDAQEKMIKFAQTIPRDFGVRYNPYTQSIDILDSARQIRVLMREVHQEMEL 512
           +   A+E  IK  +T+     V   P     + L + R+   L  E  +E+E+
Sbjct: 186 TDPAARESFIKKQKTLNSTRTVNNQPLVNKGEQL-APRRAAELNDEQTREIEM 237


>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = -3

Query: 135 CNHQELLETQDQFLERIVQRRDPQKAGRVQAIR 37
           CNH +L+  +    +      DP+K+G+++ IR
Sbjct: 599 CNHPDLVTREYLLHKEDYNYGDPEKSGKLKVIR 631


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +1

Query: 232 PSASYSTVSQTNLS*ESLTPSLPGVPSIPSQNTSPSI 342
           P    S+ SQ       +TPS+P  P+ P    +PS+
Sbjct: 493 PERDISSASQKAAQPSVITPSVPQPPAAPVVPEAPSV 529


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,859,312
Number of Sequences: 5004
Number of extensions: 56411
Number of successful extensions: 163
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)