Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0291
         (698 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17793| Best HMM Match : No HMM Matches (HMM E-Value=.)             206   1e-53
SB_3516| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.68 
SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_17577| Best HMM Match : fn3 (HMM E-Value=0)                         29   2.7  
SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  

>SB_17793| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 430

 Score =  206 bits (503), Expect = 1e-53
 Identities = 92/133 (69%), Positives = 111/133 (83%), Gaps = 7/133 (5%)
 Frame = +3

Query: 3   RPLYTPEPDVC-------HELLGHAPLFADPAFAQFSQEIGLASLGAPDDYIEKLATCFW 161
           +P+YTPEP +C       HEL+GH PLFADP FAQFSQEIGLASLGAPD+++EKLAT +W
Sbjct: 261 KPMYTPEPTICIVSSDVVHELIGHVPLFADPDFAQFSQEIGLASLGAPDEWVEKLATLYW 320

Query: 162 FTVEFGLCRQEGQLKAYGAGLLSSFGELQYCLSDKPELREFDPESTGGTKYPITEYQPVY 341
           FTVEFGLCRQEG++KAYGAGLLSSFGELQYCL+D+P+    +PE T   KYPIT+YQPVY
Sbjct: 321 FTVEFGLCRQEGEVKAYGAGLLSSFGELQYCLTDEPKKYPLEPEKTSVQKYPITQYQPVY 380

Query: 342 FVANSFEDAQEKM 380
           F+A+SF  A+ K+
Sbjct: 381 FIADSFLSARNKV 393


>SB_3516| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 642

 Score = 31.5 bits (68), Expect = 0.68
 Identities = 27/75 (36%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
 Frame = +1

Query: 151 RASGSRWSLVCAGKKVN*RLTAPVYCRPSASYSTVSQTNLS*ESLTPSLPGVPS--IPSQ 324
           + +  R +   AG KVN   TA   C+ S+   TVS+ N   ES    +PG P+  IPS 
Sbjct: 444 KRAAKRSTGAAAGSKVNG--TA---CQKSSGQETVSRFNCLVESSFFQVPGTPNSPIPSP 498

Query: 325 NTSPSISLLTALKMP 369
              P  S  +AL  P
Sbjct: 499 EPKPGKSQFSALTDP 513


>SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2834

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = +1

Query: 172  SLVCAGKKVN*RLTAPVYCRPSASYSTVSQTNLS*ESLTPSLPGVPSI-PSQNTSPSISL 348
            S V    +V   +T+     PS + ST + T     S+TPS  G+PS+ PS   +PS++ 
Sbjct: 1854 SSVILSAEVTTSVTSSTQVTPSVASSTQAAT-----SVTPSTQGMPSVAPSTQMTPSVAS 1908

Query: 349  LT 354
             T
Sbjct: 1909 ST 1910


>SB_17577| Best HMM Match : fn3 (HMM E-Value=0)
          Length = 1690

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = +1

Query: 220 VYCRPSASYSTVSQTNLS*ESLTPSLPGVPSIPSQNTSPSISLLTALKM 366
           VYC   A+Y+ +   N S      +L  VP  P QN   + +  TAL +
Sbjct: 649 VYCVTIAAYNRIGSGNFSEPVCVRTLEDVPDAPLQNIKIAAANSTALSL 697


>SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1011

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 16/38 (42%), Positives = 19/38 (50%)
 Frame = +1

Query: 226 CRPSASYSTVSQTNLS*ESLTPSLPGVPSIPSQNTSPS 339
           C PS   ST S  +      TPS P  PS PS  ++PS
Sbjct: 79  CTPSTP-STPSTPSTPSTPSTPSAPSTPSTPSTPSTPS 115



 Score = 28.3 bits (60), Expect = 6.3
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +1

Query: 226 CRPSASYSTVSQTNLS*ESLTPSLPGVPSIPSQNTSPS 339
           C P+   ST S  ++     TPS P  PS PS  ++PS
Sbjct: 274 CTPNTP-STPSTPSMPSTPSTPSTPSTPSTPSTPSAPS 310



 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +1

Query: 247 STVSQTNLS*ESLTPSLPGVPSIPSQNTSPS 339
           ST S  +L+    TPS P  PS PS  ++PS
Sbjct: 444 STPSTPSLTHTPSTPSTPSTPSTPSTPSTPS 474



 Score = 28.3 bits (60), Expect = 6.3
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +1

Query: 226 CRPSASYSTVSQTNLS*ESLTPSLPGVPSIPSQNTSPS 339
           C P+   ST S  ++     TPS P  PS PS  ++PS
Sbjct: 824 CTPNTP-STPSTPSMPSTPSTPSTPSTPSTPSTPSAPS 860



 Score = 27.9 bits (59), Expect = 8.4
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +1

Query: 232 PSASYSTVSQTNLS*ESLTPSLPGVPSIPSQNTSPS 339
           PS   +  + + LS  S TPS+P  PS PS  ++PS
Sbjct: 201 PSTPSTPSTPSTLSMPS-TPSMPNTPSTPSTPSTPS 235



 Score = 27.9 bits (59), Expect = 8.4
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +1

Query: 286 TPSLPGVPSIPSQNTSPS 339
           TPS PG PS PS  ++PS
Sbjct: 520 TPSAPGTPSTPSTPSTPS 537



 Score = 27.9 bits (59), Expect = 8.4
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +1

Query: 232 PSASYSTVSQTNLS*ESLTPSLPGVPSIPSQNTSPS 339
           PS   +  + + LS  S TPS+P  PS PS  ++PS
Sbjct: 751 PSTPSTPSTPSTLSMPS-TPSMPNTPSTPSTPSTPS 785


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,859,868
Number of Sequences: 59808
Number of extensions: 434300
Number of successful extensions: 1702
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1318
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1650
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)