Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0291
(698 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g22780.1 68418.m02663 adaptin family protein similar to SP|P1... 30 1.3
At4g17910.1 68417.m02669 zinc finger (C3HC4-type RING finger) fa... 30 1.7
At3g47770.1 68416.m05204 ABC transporter family protein AbcA, Di... 29 3.9
At3g22530.1 68416.m02847 expressed protein contains Pfam profile... 29 3.9
At1g59890.1 68414.m06747 paired amphipathic helix repeat-contain... 29 3.9
At5g15780.1 68418.m01845 pollen Ole e 1 allergen and extensin fa... 28 5.2
At5g22770.3 68418.m02661 adaptin family protein similar to SP|P1... 28 6.8
At5g22770.2 68418.m02660 adaptin family protein similar to SP|P1... 28 6.8
At5g22770.1 68418.m02659 adaptin family protein similar to SP|P1... 28 6.8
At4g35800.1 68417.m05087 DNA-directed RNA polymerase II largest ... 27 9.0
At2g24280.1 68415.m02901 serine carboxypeptidase S28 family prot... 27 9.0
>At5g22780.1 68418.m02663 adaptin family protein similar to
SP|P18484 adaptor-related protein complex 2 alpha 2
subunit (Alpha-adaptin C) (Clathrin assembly protein
complex 2 alpha-C large chain) {Rattus norvegicus};
contains Pfam profiles PF01602 Adaptin N terminal
region, PF02883 Adaptin C-terminal domain
Length = 1013
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +3
Query: 15 TPEPDVCHELLGHAPLFADPAFAQFSQEIGLASLGAPDD 131
TP PD+ +LLG + A P + Q + + G PD+
Sbjct: 676 TPSPDLLSDLLGPLAIEAPPGAVSYEQHGPVGAEGVPDE 714
>At4g17910.1 68417.m02669 zinc finger (C3HC4-type RING finger)
family protein / pentatricopeptide (PPR)
repeat-containing protein contains Pfam domains PF01535:
PPR repeat and PF00097: Zinc finger, C3HC4 type (RING
finger)
Length = 1208
Score = 29.9 bits (64), Expect = 1.7
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = -1
Query: 674 LKLCTNKLCKFRKLEK 627
L +C + LCKFRKLEK
Sbjct: 16 LNICVDSLCKFRKLEK 31
>At3g47770.1 68416.m05204 ABC transporter family protein AbcA,
Dictyostelium discoideum, U66526
Length = 900
Score = 28.7 bits (61), Expect = 3.9
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +2
Query: 152 VLLVHGGVWSVPARRSTKGLRRRSTVVL 235
V L HGGV +PA + + G++RR +V +
Sbjct: 708 VNLFHGGVADIPAGKYSGGMKRRLSVAI 735
>At3g22530.1 68416.m02847 expressed protein contains Pfam
profile:PF00011 HSP20:Hsp20/alpha crystallin family
Length = 198
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +3
Query: 87 FSQEIGLASLGAPDDYIEKLATCFWFTVE-FGLCRQEGQLKAY 212
F++ + L D +E+ CF F E GLC +G+++AY
Sbjct: 68 FNRVLELPLRSEADVAVEERHDCFRFVAETVGLCNGDGEMRAY 110
>At1g59890.1 68414.m06747 paired amphipathic helix repeat-containing
protein similar to transcription co-repressor Sin3
[Xenopus laevis] GI:4960210; contains Pfam profile
PF02671: Paired amphipathic helix repeat
Length = 1159
Score = 28.7 bits (61), Expect = 3.9
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = +3
Query: 381 IKFAQTIPRDFGVRYNPYTQSIDILDSARQIRVLMREVHQEMELLLNAMDKL 536
I+F I FG Y + +DIL+ R+ + EV+QE+ LL + L
Sbjct: 131 IEFVNRIKARFGGDDRAYKKFLDILNMYRKETKSINEVYQEVTLLFQDHEDL 182
>At5g15780.1 68418.m01845 pollen Ole e 1 allergen and extensin
family protein contains Pfam profile PF01190: Pollen
proteins Ole e I family
Length = 401
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +1
Query: 289 PSLPGVPSIPSQNTSPSISLLTALKMP 369
PSLP +P IP+ T P+I LL P
Sbjct: 296 PSLPPIPLIPTPPTLPTIPLLPTPPTP 322
>At5g22770.3 68418.m02661 adaptin family protein similar to
SP|P18484 adaptor-related protein complex 2 alpha 2
subunit (Alpha-adaptin C) (Clathrin assembly protein
complex 2 alpha-C large chain) {Rattus norvegicus};
contains Pfam profiles PF01602 Adaptin N terminal
region, PF02883 Adaptin C-terminal domain
Length = 1012
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +3
Query: 15 TPEPDVCHELLGHAPLFADPAFAQFSQEIGLASLGAPDD 131
TP PD+ +LLG + A P Q + + G PD+
Sbjct: 676 TPSPDLLSDLLGPLAIEAPPGAVSNEQHGPVGAEGVPDE 714
>At5g22770.2 68418.m02660 adaptin family protein similar to
SP|P18484 adaptor-related protein complex 2 alpha 2
subunit (Alpha-adaptin C) (Clathrin assembly protein
complex 2 alpha-C large chain) {Rattus norvegicus};
contains Pfam profiles PF01602 Adaptin N terminal
region, PF02883 Adaptin C-terminal domain
Length = 1012
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +3
Query: 15 TPEPDVCHELLGHAPLFADPAFAQFSQEIGLASLGAPDD 131
TP PD+ +LLG + A P Q + + G PD+
Sbjct: 676 TPSPDLLSDLLGPLAIEAPPGAVSNEQHGPVGAEGVPDE 714
>At5g22770.1 68418.m02659 adaptin family protein similar to
SP|P18484 adaptor-related protein complex 2 alpha 2
subunit (Alpha-adaptin C) (Clathrin assembly protein
complex 2 alpha-C large chain) {Rattus norvegicus};
contains Pfam profiles PF01602 Adaptin N terminal
region, PF02883 Adaptin C-terminal domain
Length = 1012
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +3
Query: 15 TPEPDVCHELLGHAPLFADPAFAQFSQEIGLASLGAPDD 131
TP PD+ +LLG + A P Q + + G PD+
Sbjct: 676 TPSPDLLSDLLGPLAIEAPPGAVSNEQHGPVGAEGVPDE 714
>At4g35800.1 68417.m05087 DNA-directed RNA polymerase II largest
subunit (RPB205) (RPII) (RPB1) nearly identical to
P|P18616 DNA-directed RNA polymerase II largest subunit
(EC 2.7.7.6) {Arabidopsis thaliana}
Length = 1840
Score = 27.5 bits (58), Expect = 9.0
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +1
Query: 211 TAPVYCRPSASYSTVSQTNLS*ESLTPSLPGVPSIPSQN-TSPSIS 345
T+P Y SA YS + S L+P+ P P+ P+ + TSPS S
Sbjct: 1723 TSPSYNPQSAKYSPSIAYSPSNARLSPASPYSPTSPNYSPTSPSYS 1768
>At2g24280.1 68415.m02901 serine carboxypeptidase S28 family protein
contains Pfam profile: PF05577 Serine carboxypeptidase
S28
Length = 494
Score = 27.5 bits (58), Expect = 9.0
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3
Query: 159 WFTVEFGLCRQEGQLKAYGAGLLSSFG 239
W T EFG R E LK +G+ ++ S G
Sbjct: 399 WITTEFGGMRIETVLKRFGSNIIFSNG 425
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,168,047
Number of Sequences: 28952
Number of extensions: 306509
Number of successful extensions: 794
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 793
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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