Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0290
         (826 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces ...    29   1.1  
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc...    27   3.2  
SPAC13D6.01 |pof14||F-box protein Pof14|Schizosaccharomyces pomb...    27   4.3  
SPAC24B11.11c |sid2||Sid2p-Mob1p kinase complex|Schizosaccharomy...    26   7.5  
SPBC713.05 |||WD repeat protein, human MAPK organizer 1 |Schizos...    25   9.9  
SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase |Schizosac...    25   9.9  
SPCC1795.10c |||Sed5 Vesicle Protein Svp26 |Schizosaccharomyces ...    25   9.9  
SPAC144.08 |||DNAJ domain protein Jac1 |Schizosaccharomyces pomb...    25   9.9  
SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4 |S...    25   9.9  

>SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 359

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 5/37 (13%)
 Frame = -3

Query: 692 LMEFMAIWRGRLKTKDAVYD-----FEDYKNVILGCI 597
           L+EF A W G  K+   VY+     FED+ +V++G I
Sbjct: 43  LIEFYATWCGHCKSLAPVYEELGALFEDHNDVLIGKI 79


>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 732

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 672 YCHELHQRTYVCDL*LGR 725
           +C E H+R Y+CD   GR
Sbjct: 263 HCREKHERCYICDQVAGR 280


>SPAC13D6.01 |pof14||F-box protein Pof14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 431

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 20/75 (26%), Positives = 36/75 (48%)
 Frame = -3

Query: 626 DYKNVILGCISHIEVIEFQNSYEWVKKKRIPRCNDDLVPINNFLLSSLVEVTFVNGCRNM 447
           DY+ ++  C     ++E  N Y     + +P      +P ++ L SSL  +T  +   N+
Sbjct: 100 DYEGLLDKCSLSRNLLELINDYAEYTTQVLPFRK---IPSSDNLDSSL-NLTVASPKSNL 155

Query: 446 FYRNDFESPSWIFLL 402
           +YR   ESP +  +L
Sbjct: 156 YYRYSSESPKYAKIL 170


>SPAC24B11.11c |sid2||Sid2p-Mob1p kinase complex|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 607

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = -3

Query: 620 KNVILGCISHIEVIEFQNSYEWVKKKRIPRCNDDLVPINNFLL 492
           +N ++G   HI++ +F  S   + KK+I      L  +NN ++
Sbjct: 335 ENFLVGASGHIKLTDFGLSSGIISKKKIESMKIRLQEVNNVVV 377


>SPBC713.05 |||WD repeat protein, human MAPK organizer 1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 457 HPFTNVTSTKELSKKLLMGTRSSLH 531
           HP T+V ++K  S  L+    SS+H
Sbjct: 181 HPITSVKTSKSASFSLISSLNSSIH 205


>SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 574

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +1

Query: 652 VFNLPLHIAMNSISGHTCVIFN*VGI 729
           V+NL   I      GHTC++ N  GI
Sbjct: 95  VYNLDTAIKEVVTPGHTCIVLNTTGI 120


>SPCC1795.10c |||Sed5 Vesicle Protein Svp26 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 227

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = -3

Query: 80  PIFMLFYSVFSYCVYKIAFSSY 15
           P ++  +S+FS+ +YKI F ++
Sbjct: 66  PFWLSAFSIFSHYIYKINFDTF 87


>SPAC144.08 |||DNAJ domain protein Jac1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 225

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +3

Query: 504 INGNKVIIASRYAFLFYPLIRILEFNNFN 590
           I GN  I A    F FYPL +I+ +N+F+
Sbjct: 26  ITGNHWIFAR---FKFYPLNKIVNYNHFH 51


>SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 517

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = +2

Query: 545 SFLPTHTNFGIQ*LQYAICNPKLHSYSLQNRTQHLLFLICLSILP*TPSAD 697
           +F  T  N     + Y+ C P   + SLQ   +H+  L+ +  L  TPS D
Sbjct: 403 AFCSTQINSPSSYINYSKCAPSSPTLSLQKHREHVKSLLYVPDL--TPSFD 451


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,255,109
Number of Sequences: 5004
Number of extensions: 68146
Number of successful extensions: 191
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 404442380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)