Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0290
         (826 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g14965.1 68417.m02300 cytochrome b5 domain-containing protein...    33   0.30 
At1g02570.1 68414.m00208 expressed protein                             31   0.93 
At5g18370.1 68418.m02161 disease resistance protein (TIR-NBS-LRR...    29   2.8  
At4g13110.1 68417.m02043 BSD domain-containing protein contains ...    28   6.5  
At3g51530.1 68416.m05643 F-box family protein various predicted ...    28   6.5  

>At4g14965.1 68417.m02300 cytochrome b5 domain-containing protein
           similar to SP|O15173 Membrane associated progesterone
           receptor component 2 (Steroid receptor protein DG6)
           {Homo sapiens}; contains Pfam profile PF00173:
           Heme/Steroid binding domain
          Length = 245

 Score = 32.7 bits (71), Expect = 0.30
 Identities = 13/33 (39%), Positives = 22/33 (66%)
 Frame = -3

Query: 518 LVPINNFLLSSLVEVTFVNGCRNMFYRNDFESP 420
           ++P   FLLS  V VTF+    ++++R+ F+SP
Sbjct: 1   MIPARRFLLSPFVGVTFIVVLVSLYFRSSFKSP 33


>At1g02570.1 68414.m00208 expressed protein
          Length = 431

 Score = 31.1 bits (67), Expect = 0.93
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 612 YILIVFKIVHSIFCF*SASPYCHELHQRTYVC 707
           +++IVF ++HS+    S  P C  LH   Y+C
Sbjct: 228 FLIIVFTLIHSL----SGKPECSVLHSHLYIC 255


>At5g18370.1 68418.m02161 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1210

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 21/83 (25%), Positives = 40/83 (48%)
 Frame = +1

Query: 280 KTSSPKLL*AK*SCYYAFLFTFVNASWNIF*GWHDQGIVFFNKKIQLGDSKSFL*NILRH 459
           KT+  ++L  + S  + F     N   + + GWHD+G + F  +I  GD +  L N+ R 
Sbjct: 268 KTTIARVLYDQISEKFQFSAFIENIRLSYWKGWHDEGNLDFPVEIMTGDRQRKL-NLQRR 326

Query: 460 PFTNVTSTKELSKKLLMGTRSSL 528
             + + + K++  + L   +  L
Sbjct: 327 LLSELFNQKDIQVRHLGAVQERL 349


>At4g13110.1 68417.m02043 BSD domain-containing protein contains
           Pfam profile PF03909: BSD domain
          Length = 316

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 18/49 (36%), Positives = 27/49 (55%)
 Frame = -2

Query: 408 LIKKHNPLIMPTLKNIPRGINESKKEGIVTTLFSLKKFWRRCFGKVYRL 262
           L +K N ++   L N  +G+ E  +E IV      + FWRR + KVY+L
Sbjct: 164 LEEKRNEIV--ELINGNKGVKEIYEE-IVPVEVDAETFWRRYYYKVYKL 209


>At3g51530.1 68416.m05643 F-box family protein various predicted
           proteins, Arabidopsis thaliana; contains Pfam profile
           PF00646: F-box domain
          Length = 455

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 553 THSYEFWNSITSICDMQPKITFL 621
           TH  E+WN +T + D  PK+  L
Sbjct: 325 THKVEWWNLLTHMLDSSPKLQVL 347


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,012,858
Number of Sequences: 28952
Number of extensions: 319323
Number of successful extensions: 698
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 698
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1892353600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)