Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0289
         (780 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC216.04c |||methionine sulfoxide |Schizosaccharomyces pombe|c...    52   1e-07
SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2 |Schizosacc...    29   0.57 
SPBC1539.04 |||conserved eukaryotic protein|Schizosaccharomyces ...    27   2.3  
SPBC530.09c |||cation dependent mannose-6-phosphate cargo recept...    27   2.3  
SPBC4F6.09 |str1||siderophore-iron transporter Str1 |Schizosacch...    26   7.0  
SPAC9.13c |cwf16|SPAPJ735.01c|splicing factor |Schizosaccharomyc...    26   7.0  

>SPBC216.04c |||methionine sulfoxide |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 138

 Score = 51.6 bits (118), Expect = 1e-07
 Identities = 26/52 (50%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
 Frame = +1

Query: 25  KVTLHRDTSAGLVRTEVRCSKCAAHLGHVF-DDGPA-PTRKRFCINSASLDF 174
           KV    D S G+ R E  C+ C  HLGH+F  +G + PT +R CINSASL+F
Sbjct: 79  KVKRIEDNSYGMHRVEAVCANCGGHLGHIFKGEGYSNPTDERHCINSASLEF 130


>SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 830

 Score = 29.5 bits (63), Expect = 0.57
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +1

Query: 79  CSKCAAHLGHVFDDGPAPTRKRFCINSAS 165
           C+KC A LG  F D     +  FC N +S
Sbjct: 334 CTKCGATLGPFFQDSSVEVKISFCHNCSS 362


>SPBC1539.04 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 279

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +1

Query: 445 IVCTLHTFIFFLLYTFVLVFSQSIARIVG 531
           +V +L TF+ F L+  V +   SI+R+VG
Sbjct: 174 LVASLETFLLFRLFFGVFLRKNSISRLVG 202


>SPBC530.09c |||cation dependent mannose-6-phosphate cargo receptor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 296

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 249 YNINYFMNKCHVCCENLTNYIV 314
           +  N+ +N CH    NLTNY V
Sbjct: 78  FGTNFSINLCHPVVSNLTNYTV 99


>SPBC4F6.09 |str1||siderophore-iron transporter Str1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 612

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
 Frame = +2

Query: 353 YINRYTNEYSDCCDQC---LIAKISREYKWFFTALFVHYI 463
           YI+ YT  ++ C       ++ ++++ YKW+F A    YI
Sbjct: 406 YIS-YTYSFTSCATGFFLGILIRLTKRYKWYFVASIPVYI 444


>SPAC9.13c |cwf16|SPAPJ735.01c|splicing factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
 Frame = +1

Query: 16  AKEKVTLHRDTSAGLVRTEVRCSKCAAHLGHVFDDGPAPTRKRFCINS-ASLDFIPAEER 192
           A+++ T  +  S  ++R  +RC++CAA +  + D    P    +   S AS ++ P  E+
Sbjct: 63  ARKEKTGEKYFSIDILRFYIRCTRCAAEITFITD----PKHADYAAESGASRNYEPWHEK 118

Query: 193 K 195
           +
Sbjct: 119 R 119


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,082,995
Number of Sequences: 5004
Number of extensions: 65053
Number of successful extensions: 141
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)