Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0289
         (780 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0264 + 19537582-19537919,19539670-19539826,19539939-195400...    51   9e-07
03_03_0024 + 13843517-13843620,13846424-13846580,13846667-13846816     48   1e-05
03_01_0257 + 1994645-1995061                                           32   0.59 
01_06_1596 - 38514278-38514346,38514547-38514705,38514776-385148...    31   1.0  
05_06_0251 + 26687833-26688120,26689288-26689365,26690499-266905...    31   1.4  
05_01_0204 - 1461676-1462033,1462173-1462240                           30   1.8  
01_06_1118 - 34636919-34637031,34637032-34637082,34637250-346372...    29   4.1  

>05_04_0264 +
           19537582-19537919,19539670-19539826,19539939-19540092,
           19540281-19540417
          Length = 261

 Score = 51.2 bits (117), Expect = 9e-07
 Identities = 24/44 (54%), Positives = 29/44 (65%), Gaps = 2/44 (4%)
 Frame = +1

Query: 64  RTEVRCSKCAAHLGHVFD-DG-PAPTRKRFCINSASLDFIPAEE 189
           R E+ C+ C  HLGHVF  +G   PT +R C+NS SL FIPA E
Sbjct: 172 RIEITCAACGGHLGHVFKGEGFNTPTDERHCVNSISLKFIPASE 215


>03_03_0024 + 13843517-13843620,13846424-13846580,13846667-13846816
          Length = 136

 Score = 47.6 bits (108), Expect = 1e-05
 Identities = 20/42 (47%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
 Frame = +1

Query: 64  RTEVRCSKCAAHLGHVF--DDGPAPTRKRFCINSASLDFIPA 183
           R E+ C+ C  HLGHVF  +    PT +R C+NS S+ F PA
Sbjct: 94  RVEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSIKFTPA 135


>03_01_0257 + 1994645-1995061
          Length = 138

 Score = 31.9 bits (69), Expect = 0.59
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 64  RTEVRCSKCAAHLGHVFDDGP 126
           RT + C  C   LG+V+DDGP
Sbjct: 76  RTRISCDACGRLLGYVYDDGP 96


>01_06_1596 -
           38514278-38514346,38514547-38514705,38514776-38514898,
           38514985-38515047,38515248-38515352,38515487-38515586,
           38515716-38515786,38516329-38516385,38516830-38516907,
           38516975-38517049,38517180-38517230,38517453-38517466,
           38517516-38517616,38517703-38517764,38518346-38518372,
           38518901-38519581
          Length = 611

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +1

Query: 55  GLVRTEVRCSKCAAHLGHVFDDGPAPT 135
           G +R E  C +CAAH+   F   P PT
Sbjct: 30  GRIRAEANCPRCAAHMSVQFSLQPLPT 56


>05_06_0251 +
           26687833-26688120,26689288-26689365,26690499-26690580,
           26691155-26691195,26691973-26692143,26693586-26693813,
           26694237-26694638
          Length = 429

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 15/40 (37%), Positives = 16/40 (40%)
 Frame = -1

Query: 135 GGCWPVIKHVAQMSGALGTTHLGSHQTCTSITVKCHFFFS 16
           GGC P I   A    A      G H  CT  +  CHF  S
Sbjct: 171 GGCTPKINTAATTMYAKLPMECGCHCCCTCFSANCHFIGS 210


>05_01_0204 - 1461676-1462033,1462173-1462240
          Length = 141

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +1

Query: 64  RTEVRCSKCAAHLGHVFDDGPA 129
           RT + C KC AH+G  +DD  A
Sbjct: 89  RTRLLCRKCGAHVGFAYDDRAA 110


>01_06_1118 -
           34636919-34637031,34637032-34637082,34637250-34637287,
           34637344-34637468,34637552-34637714,34638910-34639083,
           34639161-34639426
          Length = 309

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -2

Query: 500 TSTNVYNKKKINVCNVQTML*RTICIPLKSSQSDIDRNSPNIR 372
           T  N+YNK+K  +   +  L R I  PL+SS +    N P  +
Sbjct: 196 TYKNIYNKEKEKLNEYEEALKRAIYHPLQSSHTSSIANEPQAK 238


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,795,128
Number of Sequences: 37544
Number of extensions: 345549
Number of successful extensions: 638
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)