Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0289
         (780 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g53670.1 68414.m06107 transcription factor-related similar to...    64   1e-10
At4g21860.1 68417.m03161 methionine sulfoxide reductase domain-c...    49   3e-06
At4g04800.1 68417.m00702 methionine sulfoxide reductase domain-c...    49   4e-06
At4g04830.1 68417.m00705 methionine sulfoxide reductase domain-c...    48   7e-06
At4g21840.1 68417.m03158 methionine sulfoxide reductase domain-c...    47   1e-05
At4g04840.1 68417.m00706 methionine sulfoxide reductase domain-c...    47   1e-05
At4g04810.1 68417.m00703 methionine sulfoxide reductase domain-c...    46   2e-05
At4g21830.1 68417.m03157 methionine sulfoxide reductase domain-c...    44   9e-05
At4g21850.1 68417.m03159 methionine sulfoxide reductase domain-c...    42   6e-04
At2g17705.1 68415.m02051 expressed protein                             32   0.37 
At3g56000.1 68416.m06222 glycosyl transferase family 2 protein s...    30   2.0  
At3g42110.1 68416.m04323 hypothetical protein                          30   2.0  

>At1g53670.1 68414.m06107 transcription factor-related similar to
           pilin-like transcription factor [Homo sapiens]
           GI:5059062; contains Pfam profile PF01641: SelR domain
          Length = 202

 Score = 64.1 bits (149), Expect = 1e-10
 Identities = 27/45 (60%), Positives = 33/45 (73%)
 Frame = +1

Query: 64  RTEVRCSKCAAHLGHVFDDGPAPTRKRFCINSASLDFIPAEERKD 198
           R EV C+ C AHLGHVFDDGP PT KR+C+NSA+L     E+ +D
Sbjct: 158 RQEVVCAVCNAHLGHVFDDGPRPTGKRYCLNSAALKLNALEKTRD 202


>At4g21860.1 68417.m03161 methionine sulfoxide reductase
           domain-containing protein / SeIR domain-containing
           protein low similarity to pilin-like transcription
           factor [Homo sapiens] GI:5059062, SP|P14930 Peptide
           methionine sulfoxide reductase msrA/msrB (EC 1.8.4.6)
           {Neisseria gonorrhoeae}; contains Pfam profile PF01641:
           SelR domain
          Length = 202

 Score = 49.2 bits (112), Expect = 3e-06
 Identities = 21/41 (51%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
 Frame = +1

Query: 64  RTEVRCSKCAAHLGHVF--DDGPAPTRKRFCINSASLDFIP 180
           R E+ C+ C  HLGHVF  +  P PT +R C+NS SL F P
Sbjct: 157 RIEITCAACGGHLGHVFKGEGFPTPTDERHCVNSISLKFTP 197


>At4g04800.1 68417.m00702 methionine sulfoxide reductase
           domain-containing protein / SeIR domain-containing
           protein low similarity to pilin-like transcription
           factor [Homo sapiens] GI:5059062, SP|P14930 Peptide
           methionine sulfoxide reductase msrA/msrB (EC 1.8.4.6)
           {Neisseria gonorrhoeae}; contains Pfam profile PF01641:
           SelR domain
          Length = 176

 Score = 48.8 bits (111), Expect = 4e-06
 Identities = 23/42 (54%), Positives = 28/42 (66%), Gaps = 2/42 (4%)
 Frame = +1

Query: 64  RTEVRCSKCAAHLGHVF-DDGPA-PTRKRFCINSASLDFIPA 183
           R E+ C+ C  HLGHVF  +G A PT +R C+NS SL F PA
Sbjct: 131 RIEINCATCGGHLGHVFKGEGFATPTDERHCVNSVSLKFTPA 172


>At4g04830.1 68417.m00705 methionine sulfoxide reductase
           domain-containing protein / SeIR domain-containing
           protein low similarity to pilin-like transcription
           factor [Homo sapiens] GI:5059062, SP|P14930 Peptide
           methionine sulfoxide reductase msrA/msrB (EC 1.8.4.6)
           {Neisseria gonorrhoeae}; contains Pfam profile PF01641:
           SelR domain
          Length = 139

 Score = 48.0 bits (109), Expect = 7e-06
 Identities = 22/43 (51%), Positives = 29/43 (67%), Gaps = 2/43 (4%)
 Frame = +1

Query: 64  RTEVRCSKCAAHLGHVF-DDGPA-PTRKRFCINSASLDFIPAE 186
           RTE+ C+ C  HLGHVF  +G   PT +R C+NS S+ F PA+
Sbjct: 92  RTEITCAACDGHLGHVFKGEGYGNPTDERHCVNSVSISFNPAK 134


>At4g21840.1 68417.m03158 methionine sulfoxide reductase
           domain-containing protein / SelR domain-containing
           protein weak similarity to pilin-like transcription
           factor [Homo sapiens] GI:5059062, SP|P14930 Peptide
           methionine sulfoxide reductase msrA/msrB (EC 1.8.4.6)
           {Neisseria gonorrhoeae}; contains Pfam profile PF01641:
           SelR domain
          Length = 143

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 23/50 (46%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
 Frame = +1

Query: 52  AGLVRTEVRCSKCAAHLGHVF--DDGPAPTRKRFCINSASLDFIPAEERK 195
           AG  R E+ C+ C  HLGHVF  +    PT +R C+NS SL F  A+  K
Sbjct: 94  AGGRRMEITCAVCDGHLGHVFKGEGYSTPTDQRHCVNSVSLKFASADSSK 143


>At4g04840.1 68417.m00706 methionine sulfoxide reductase
           domain-containing protein / SeIR domain-containing
           protein low similarity to pilin-like transcription
           factor [Homo sapiens] GI:5059062; contains Pfam profile
           PF01641: SelR domain
          Length = 153

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 24/46 (52%), Positives = 31/46 (67%), Gaps = 2/46 (4%)
 Frame = +1

Query: 52  AGLVRTEVRCSKCAAHLGHVF-DDG-PAPTRKRFCINSASLDFIPA 183
           AGL R E+ C+KC  HLGHV  ++G P PT +R C+NS +L F  A
Sbjct: 105 AGL-RYEITCTKCDGHLGHVLKNEGFPTPTDERHCVNSVALKFSSA 149


>At4g04810.1 68417.m00703 methionine sulfoxide reductase
           domain-containing protein / SeIR domain-containing
           protein low similarity to pilin-like transcription
           factor [Homo sapiens] GI:5059062, SP|P14930 Peptide
           methionine sulfoxide reductase msrA/msrB (EC 1.8.4.6)
           {Neisseria gonorrhoeae}; contains Pfam profile PF01641:
           SelR domain
          Length = 139

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 20/43 (46%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
 Frame = +1

Query: 64  RTEVRCSKCAAHLGHVF--DDGPAPTRKRFCINSASLDFIPAE 186
           RTE+ C+ C  HLGHV   +    PT +R C+NS S++F PA+
Sbjct: 92  RTEITCAVCDGHLGHVHKGEGYSTPTDERLCVNSVSINFNPAK 134


>At4g21830.1 68417.m03157 methionine sulfoxide reductase
           domain-containing protein / SeIR domain-containing
           protein low similarity to pilin-like transcription
           factor [Homo sapiens] GI:5059062, SP|P14930 Peptide
           methionine sulfoxide reductase msrA/msrB (EC 1.8.4.6)
           {Neisseria gonorrhoeae}; contains Pfam profile PF01641:
           SelR domain
          Length = 144

 Score = 44.4 bits (100), Expect = 9e-05
 Identities = 22/46 (47%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
 Frame = +1

Query: 52  AGLVRTEVRCSKCAAHLGHVF--DDGPAPTRKRFCINSASLDFIPA 183
           AG  R E+ C+ C  HLGHVF  +    PT +R C+NS SL F  A
Sbjct: 95  AGGRRMEITCAVCDGHLGHVFKGEGYSTPTDQRHCVNSVSLKFSSA 140


>At4g21850.1 68417.m03159 methionine sulfoxide reductase
           domain-containing protein / SeIR domain-containing
           protein low similarity to pilin-like transcription
           factor [Homo sapiens] GI:5059062, SP|P14930 Peptide
           methionine sulfoxide reductase msrA/msrB (EC 1.8.4.6)
           {Neisseria gonorrhoeae}; contains Pfam profile PF01641:
           SelR domain
          Length = 143

 Score = 41.5 bits (93), Expect = 6e-04
 Identities = 20/43 (46%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
 Frame = +1

Query: 52  AGLVRTEVRCSKCAAHLGHVF--DDGPAPTRKRFCINSASLDF 174
           AG  R E+ C+ C  HLGHV   +  P  T +R C+NS SL F
Sbjct: 95  AGGRRMEITCAACDGHLGHVVKGEGFPTATDERHCVNSVSLKF 137


>At2g17705.1 68415.m02051 expressed protein
          Length = 135

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = +1

Query: 64  RTEVRCSKCAAHLGHVFDDGPAPT 135
           RT+++C+ C   +G+++DDGP  T
Sbjct: 71  RTKIKCTSCNHLIGYIYDDGPPLT 94


>At3g56000.1 68416.m06222 glycosyl transferase family 2 protein
           similar to beta-(1-3)-glucosyl transferase GB:AAC62210
           GI:3687658 from [Bradyrhizobium japonicum], cellulose
           synthase from Agrobacterium tumeficiens [gi:710492] and
           Agrobacterium radiobacter [gi:710493]; contains Pfam
           glycosyl transferase, group 2 family protein domain
           PF00535
          Length = 535

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +1

Query: 415 FKGIQMVLYSIVCTLHTFIFFLLYTFVLVFSQSIARIV 528
           ++ I + +Y  +C  + F+F   Y +V +F QSIA  V
Sbjct: 479 WREIMVGMYLFICGYYDFVFGRTYLYVYLFLQSIAFFV 516


>At3g42110.1 68416.m04323 hypothetical protein
          Length = 448

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -1

Query: 156 IYTKTFSGG-CWPVIKHVAQMSGALGTTHLGSHQTCTSITVKCH 28
           I+T  ++GG  WP   H+ +M+   GTT +GS    T I  + H
Sbjct: 48  IFTLNYAGGQFWPT-NHLYKMTFTNGTTVMGSDPPTTKIEFELH 90


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,230,083
Number of Sequences: 28952
Number of extensions: 305612
Number of successful extensions: 628
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 620
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1746037600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)