Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0288
         (541 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18H10.17c |||mitochondrial ribosomal protein subunit Mrp49 |...    28   0.77 
SPBC25H2.10c |||tRNA acetyltransferase |Schizosaccharomyces pomb...    27   1.3  
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po...    27   1.8  
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ...    27   1.8  
SPAC29A4.15 |||serine-tRNA ligase|Schizosaccharomyces pombe|chr ...    27   1.8  
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|...    27   1.8  
SPCC16A11.06c |gpi10||pig-B|Schizosaccharomyces pombe|chr 3|||Ma...    26   3.1  
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p...    26   4.1  
SPBC887.10 |mcs4||two-component response regulator |Schizosaccha...    25   5.4  
SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|c...    25   7.2  
SPAC18G6.07c |mra1||ribosome biogenesis protein Mra1|Schizosacch...    25   9.5  
SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p...    25   9.5  

>SPBC18H10.17c |||mitochondrial ribosomal protein subunit Mrp49
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 175

 Score = 28.3 bits (60), Expect = 0.77
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 7/39 (17%)
 Frame = -2

Query: 315 YPQATALAPND-------SDRWTPLIRCRYPNRNDFRAV 220
           YP    +APN         D W PL++  +PN + F++V
Sbjct: 37  YPLQKPVAPNGMRPAKLRKDHWVPLLKVEFPNESMFQSV 75


>SPBC25H2.10c |||tRNA acetyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 287

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +3

Query: 300 LWPEGKMKDSDNKNRVKECNWSYENEVNVSDEKLREE 410
           LWPE +  D +N+   +E   +   E+N   +K ++E
Sbjct: 66  LWPETQSSDQENEEEGEELEDAVAKEINSLQKKNKKE 102


>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 670

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
 Frame = +3

Query: 291 AQELWPEGKMKD--SDNKNRVKECNWSYENEVN--VSDEKLREENT 416
           ++++  E  MKD  ++   R+KE   SYENEVN  ++   L+E  T
Sbjct: 512 SKQVEEESSMKDDLTEMNQRLKEQIESYENEVNSEITSRTLKEFET 557


>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1044

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
 Frame = +3

Query: 315 KMKDSDNKNRVKEC-NWSYENEVNVSDEKLREENTGNGIISRTIRRESETASCEKDN 482
           K K  +N     E  N   EN++N+  EKL ++N        TIR    +     DN
Sbjct: 737 KSKSLNNSLAALESKNKKLENDLNLLTEKLNKKNADTESFKNTIREAELSKKALNDN 793


>SPAC29A4.15 |||serine-tRNA ligase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 450

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
 Frame = +3

Query: 234 RFDLDNGNESTESIYQNRSAQELWPEGKMKDSDNKNRVKECNWSYENEVNVSDEKLREEN 413
           RF+LDN N+S      NR  +E+  + K K+ D    ++E N   E + N+ +++  +  
Sbjct: 46  RFELDNTNKSI-----NRVQKEIGLKMKAKE-DASELLEEKNSLTERKKNLIEQETAKNK 99

Query: 414 TGNGIISR--TIRRESETASCEKDND 485
               ++S    I  +S   S ++DN+
Sbjct: 100 EMLNVVSSIGNIVHDSVPVSMDEDNN 125


>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
           Snf21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1199

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = -3

Query: 344 AILVVRILHLTLRPQLLRR 288
           ++LV+R LH  LRP LLRR
Sbjct: 626 SLLVIRRLHKVLRPFLLRR 644


>SPCC16A11.06c |gpi10||pig-B|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 506

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -3

Query: 434 TYDSIACVFLS*FLIGHVNFVFVAPIA 354
           T  +I CVF    LIGH    FV PI+
Sbjct: 309 TAGTILCVFFPYSLIGHKELRFVYPIS 335


>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 584

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
 Frame = +3

Query: 237 FDLDNGNESTESIYQNRSAQELWPEGKMKDSD---NKNRVKECNWSYENEVNVSDEKLR 404
           FD ++ + +   I Q  +A E  P  KM  S+   ++NR ++  W  +NE    D  LR
Sbjct: 131 FDPNDPSAAAFYIAQQVAAIEHPPPRKMTSSEKTRSENRERKKRWREQNEERNKDNDLR 189


>SPBC887.10 |mcs4||two-component response regulator
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 522

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
 Frame = -2

Query: 330 PNPSSYPQATALAPNDSDRWTPLIRCRYPNRNDFR---AVGGPDNEL*FR 190
           PN SS  Q+  L+PN+S  +  ++   YP+  DF     V  PD  +  R
Sbjct: 56  PNASSELQSRELSPNESILF--VMETYYPHGQDFNDALLVASPDTSVALR 103


>SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 566

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 15/54 (27%), Positives = 24/54 (44%)
 Frame = +3

Query: 330 DNKNRVKECNWSYENEVNVSDEKLREENTGNGIISRTIRRESETASCEKDNDIK 491
           DN   ++E   S+ENE   SD+  + E    G     I    E  +  +D+ I+
Sbjct: 294 DNNIVLREVKVSFENEKIESDDLDKNEEISEGEEYTPIEESKEPITVRRDSVIQ 347


>SPAC18G6.07c |mra1||ribosome biogenesis protein
           Mra1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 359

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 23/92 (25%), Positives = 40/92 (43%)
 Frame = +3

Query: 255 NESTESIYQNRSAQELWPEGKMKDSDNKNRVKECNWSYENEVNVSDEKLREENTGNGIIS 434
           ++S+E+I    +A EL  + K + +     +++       E   S E L ++        
Sbjct: 28  SQSSETITSGETASELMQDEKEQSNGAVGSIEDEELQRLRENQASVEALSKK-------P 80

Query: 435 RTIRRESETASCEKDNDIKPALLNIDPDSASS 530
            +I RE    + E DN +K      DP+ ASS
Sbjct: 81  ESIDRELGVEALEIDNVVKSDEEKEDPNGASS 112


>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 595

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -3

Query: 497 GRLNIVVLFTRSRLALASYCATYDSIACVF 408
           G L   V  +  R+ ++S C  Y S+AC F
Sbjct: 314 GDLAPSVAISLQRIKVSSLCILYPSLACCF 343


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,170,645
Number of Sequences: 5004
Number of extensions: 44222
Number of successful extensions: 134
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)