Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0288
         (541 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46589| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.8  
SB_25115| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_23985| Best HMM Match : CRAM_rpt (HMM E-Value=3.4)                  29   2.4  
SB_27302| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_12106| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_7395| Best HMM Match : SURF6 (HMM E-Value=1.8)                      29   3.2  
SB_49241| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.2  
SB_35684| Best HMM Match : HELP (HMM E-Value=0.17)                     28   4.2  
SB_3655| Best HMM Match : BTB (HMM E-Value=0.035)                      28   4.2  
SB_25160| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.6  
SB_15566| Best HMM Match : No HMM Matches (HMM E-Value=.)              23   6.0  
SB_26786| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.4  
SB_50302| Best HMM Match : DUF963 (HMM E-Value=0.96)                   27   9.8  
SB_2118| Best HMM Match : PAN (HMM E-Value=0.0011)                     27   9.8  
SB_35403| Best HMM Match : Lectin_C (HMM E-Value=1e-05)                27   9.8  
SB_12505| Best HMM Match : FHA (HMM E-Value=0.097)                     27   9.8  

>SB_46589| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 562

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
 Frame = +3

Query: 381 NVSDEKLREENTGNGIISRT---IRRESETASCEKDNDIKPALLNIDPDSASSPKP 539
           N S EK+ E   G G  ++T   + +  E A        KPAL+N+  D+++  KP
Sbjct: 210 NASYEKMMEAFGGKGYCAQTSAELHKALEQAFYNTATTCKPALINVIIDTSADRKP 265


>SB_25115| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 169

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 19/54 (35%), Positives = 27/54 (50%)
 Frame = -2

Query: 477 PFHKKPSRSRVVLCDL*FHCLCFPLLISHRTR*LRFRSSNCIL*RDSCCPNPSS 316
           P   +P R R V  D    CLC P      T+ L  R++ C + +D C P+PS+
Sbjct: 60  PVSNRPYRGRNVRQD---ECLCMPCA----TQSLIARTAGCDVRQDECEPSPSA 106


>SB_23985| Best HMM Match : CRAM_rpt (HMM E-Value=3.4)
          Length = 323

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 19/65 (29%), Positives = 29/65 (44%)
 Frame = +3

Query: 231 NRFDLDNGNESTESIYQNRSAQELWPEGKMKDSDNKNRVKECNWSYENEVNVSDEKLREE 410
           N  D  NG++ +    ++  + E     +  +SD  N   E N S  +E N SDE   E 
Sbjct: 165 NESDESNGSDESNGSDESNESDESNESDESNESDESNESDESNGS--DESNESDES-NES 221

Query: 411 NTGNG 425
           +  NG
Sbjct: 222 DESNG 226


>SB_27302| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 150

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 20/84 (23%), Positives = 33/84 (39%)
 Frame = +3

Query: 231 NRFDLDNGNESTESIYQNRSAQELWPEGKMKDSDNKNRVKECNWSYENEVNVSDEKLREE 410
           N  +  N N +  SI  NR+           +++N N +  CN +  N  N +    R  
Sbjct: 55  NSINNRNNNNNNNSI-NNRNNTNNNSINNRNNNNNNNSINNCNNNSINNRNNNSINNRSN 113

Query: 411 NTGNGIISRTIRRESETASCEKDN 482
              N I +R+      ++S   DN
Sbjct: 114 TNNNSINNRSNTNRINSSSNNNDN 137


>SB_12106| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 218

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 21/97 (21%), Positives = 35/97 (36%)
 Frame = +3

Query: 246 DNGNESTESIYQNRSAQELWPEGKMKDSDNKNRVKECNWSYENEVNVSDEKLREENTGNG 425
           DN N+       + +  +     K  + DN N   + N + +N    +D    +EN  + 
Sbjct: 41  DNTNDDNNKHINDDNDNKTNNNDKDTNDDNTNEDNDKNNNDDNNNKTNDNDTNDENINDD 100

Query: 426 IISRTIRRESETASCEKDNDIKPALLNIDPDSASSPK 536
               T  + +   S E  ND      N D D  +  K
Sbjct: 101 NEKNTNDKNNNDDSNENTNDDNDKNTNDDNDKKNDDK 137


>SB_7395| Best HMM Match : SURF6 (HMM E-Value=1.8)
          Length = 1365

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
 Frame = +3

Query: 234  RFDLDNGNESTESIYQNRSAQELW-PEGKMKDSDNKNRVKECNWSYENEVNVSDEKLREE 410
            R   D+ N  +   Y+    ++L  P+   +DS NKNR      S   ++   +++LRE 
Sbjct: 989  RLRKDSDNNISLDFYEADLEEKLENPQNWTRDSSNKNRKLSLKSSGSIDLTEDEKELREV 1048

Query: 411  NTGNGIISRTIRRESETASCEKDN 482
            +  N   S    +  +    EK+N
Sbjct: 1049 DLTNRRASFEDSKAWDRTDAEKEN 1072


>SB_49241| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 224

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
 Frame = +3

Query: 309 EGKMKDSDNKNRVKECNWSYENEVNVSDEKLREENTGNGI----ISRTIRRESETASCEK 476
           E + K    KN+ K     ++NE +   EKL E +  +G     +SR  +R  + AS E 
Sbjct: 35  EKRHKQEQEKNK-KSTEPEFQNETSRLSEKLEETHISSGCSEEKVSRAQKRRVKKASKEN 93

Query: 477 DNDIKPALLNID 512
           + + + A  +++
Sbjct: 94  EREQRIAAADLE 105


>SB_35684| Best HMM Match : HELP (HMM E-Value=0.17)
          Length = 409

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
 Frame = +3

Query: 255 NESTESIYQNRSAQELWPE--GKMKDSDNKNRVKECNWSYENEVNVSDEKLREENTGNGI 428
           N+    I + R   E W    G   D D+++   + N S  +++N+S    R  + GNG 
Sbjct: 32  NQDKAEIEEARQKGEHWRNRGGLSSDEDSEHDYDKYNTSVNSQLNLSGSLNRSASQGNGW 91

Query: 429 I 431
           I
Sbjct: 92  I 92


>SB_3655| Best HMM Match : BTB (HMM E-Value=0.035)
          Length = 369

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 2/90 (2%)
 Frame = +3

Query: 267 ESIYQNRSAQELWPEGKMKDSDNKNRVKECNWSYENEVNVSDEKLREENTGNGIISRTIR 446
           ESI+ N    +   E  + DSD K +    N   EN+ +V  E     +  N  +S    
Sbjct: 159 ESIFINTDINQSSSESDLPDSDEKMKTSSANEHTENDDDVILENGVGHDDSNIQLSENEG 218

Query: 447 RES--ETASCEKDNDIKPALLNIDPDSASS 530
           +E+    A C+  +D    LL++  DS SS
Sbjct: 219 KENIGLKACCKLGSD----LLSLRDDSLSS 244


>SB_25160| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 166

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = +3

Query: 321 KDSDNKN-RVKECNWSYENEVNVSDEKLREENTGNGIISRTIRRESETASCEKDND 485
           KDS+N N R K+ N +  N  N ++   R +N  N   ++ I   ++  +CEK+ +
Sbjct: 67  KDSNNNNDRNKKNNNNNNNSNNNNNNNNRNQNNINS-NNKNINSNNDNKACEKNRN 121


>SB_15566| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1265

 Score = 23.0 bits (47), Expect(2) = 6.0
 Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +3

Query: 315 KMKDSDNKNRVKECNWSYENEVNVSDE-KLREENT 416
           ++ D D +N +K CN S   E+   D+ ++ EE +
Sbjct: 625 ELLDDDLRNEIKRCN-SLRKELEQCDQLRITEEQS 658



 Score = 23.0 bits (47), Expect(2) = 6.0
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 432 SRTIRRESETASCEKDNDIKPALLN 506
           SR+++RE E    E+D+ +K  L N
Sbjct: 688 SRSLKREREDVKQEQDSPLKKRLGN 712


>SB_26786| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 133

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
 Frame = +3

Query: 195 TRAHYQVLQRPENRFDLDNGNESTESIYQNRSAQELWPEGKMK--DSDNKNRVKECNWSY 368
           TR +Y+   RP+   +LD+G +      Q R +     E + K    D+K +++E N   
Sbjct: 48  TRRNYRTEDRPD--VNLDSGRQKRTDKRQRRGSNSSEDEERQKRIPDDSKEKIEERN--- 102

Query: 369 ENEVNVSDEKLREEN 413
           E++     E+ +++N
Sbjct: 103 EDKATEGKEEEKKDN 117


>SB_50302| Best HMM Match : DUF963 (HMM E-Value=0.96)
          Length = 427

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
 Frame = +3

Query: 228 ENRFDLDNGNESTESIYQNRSAQELWPEGKMKDS---DNKNRVKECNWSYENEVNVSDEK 398
           +N   LDN  E  +S  + + +  L  EG++KDS   DN+  +K+ +   +NE  + D  
Sbjct: 71  KNSAVLDNEREIKDSAGEIKDSAVLDNEGEIKDSAVLDNEGEIKD-SAVLDNEGEIKDFA 129

Query: 399 LREENTGNGIISRTIRRESE 458
           +  +N G    S  +  E E
Sbjct: 130 VL-DNEGEIKYSAVLDNEGE 148


>SB_2118| Best HMM Match : PAN (HMM E-Value=0.0011)
          Length = 521

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +3

Query: 144 QLRQMSTGGS-GAVFFLGTRAHYQVLQR 224
           QL +  TG   GAV FLGT   Y++L R
Sbjct: 34  QLTEGPTGDKDGAVLFLGTDGSYRILNR 61


>SB_35403| Best HMM Match : Lectin_C (HMM E-Value=1e-05)
          Length = 2293

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 17/77 (22%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
 Frame = +3

Query: 189 LGTRAHYQVLQRPENRFDL-DNGNESTESIYQNRSAQELWPEGKMKDSDNKNRVKECNWS 365
           + ++ HY    + ENR +  D+GN+ + +   N   ++   EG +   +N  +  E N  
Sbjct: 471 VASKDHYMNKDKEENRANSDDDGNDESGNEKTNSDKKDGNDEG-LSSKNNDEKYGEGNKH 529

Query: 366 YENEVNVSDEKLREENT 416
            + E+  + +  ++E+T
Sbjct: 530 EDTELKSNKDDKKDEDT 546


>SB_12505| Best HMM Match : FHA (HMM E-Value=0.097)
          Length = 629

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 20/63 (31%), Positives = 30/63 (47%)
 Frame = +3

Query: 327 SDNKNRVKECNWSYENEVNVSDEKLREENTGNGIISRTIRRESETASCEKDNDIKPALLN 506
           S+N+N +KEC  S+E +     EK+++E     +    I  +S     EK N      LN
Sbjct: 39  SENENLMKECTMSWEQK-EKQTEKIQQER-HKALEDMGISIQSSGIGVEK-NKFYLVNLN 95

Query: 507 IDP 515
            DP
Sbjct: 96  ADP 98


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,336,681
Number of Sequences: 59808
Number of extensions: 339420
Number of successful extensions: 1002
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 996
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1227799733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)