Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0288
         (541 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       27   0.16 
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    26   0.21 
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    26   0.21 
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    24   1.1  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   2.0  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   4.6  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   4.6  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   4.6  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   4.6  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   6.1  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 26.6 bits (56), Expect = 0.16
 Identities = 18/51 (35%), Positives = 26/51 (50%)
 Frame = +3

Query: 273 IYQNRSAQELWPEGKMKDSDNKNRVKECNWSYENEVNVSDEKLREENTGNG 425
           I QN +  + W  GK K+S N   + E  ++ EN    +D+K   E TG G
Sbjct: 34  IIQNNNNDD-WSVGK-KNS-NSGTINESEFNDENYWQCNDKKTDIEETGRG 81


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 26.2 bits (55), Expect = 0.21
 Identities = 18/50 (36%), Positives = 22/50 (44%)
 Frame = +3

Query: 330 DNKNRVKECNWSYENEVNVSDEKLREENTGNGIISRTIRRESETASCEKD 479
           D     KE +  YE   N   EKL EE T     SR+  RE  +   EK+
Sbjct: 7   DRNREYKEKDRRYEKLHN-EKEKLLEERTSRKRYSRSREREQNSYKNEKE 55


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 26.2 bits (55), Expect = 0.21
 Identities = 18/50 (36%), Positives = 22/50 (44%)
 Frame = +3

Query: 330 DNKNRVKECNWSYENEVNVSDEKLREENTGNGIISRTIRRESETASCEKD 479
           D     KE +  YE   N   EKL EE T     SR+  RE  +   EK+
Sbjct: 7   DRNREYKEKDRRYEKLHN-EKEKLLEERTSRKRYSRSREREQNSYKNEKE 55


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 16/50 (32%), Positives = 22/50 (44%)
 Frame = +3

Query: 330 DNKNRVKECNWSYENEVNVSDEKLREENTGNGIISRTIRRESETASCEKD 479
           D     ++ +  YE   N   EKL EE T     SR+  RE  +   EK+
Sbjct: 7   DRNREYRKKDRQYEKLHN-EKEKLLEERTSRKRYSRSREREQNSYKNEKE 55


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 111 GWHFEISDRS*QLRQMSTGG 170
           GW  EISD+  +LR +   G
Sbjct: 85  GWETEISDQMLELRDLPISG 104


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +3

Query: 231 NRFDLDNGNESTESIYQNRSAQELW 305
           N F   NG  ST  +  N +A  +W
Sbjct: 342 NFFTTSNGFRSTLPVVSNLTAMNVW 366


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +3

Query: 231 NRFDLDNGNESTESIYQNRSAQELW 305
           N F   NG  ST  +  N +A  +W
Sbjct: 311 NFFTTSNGFRSTLPVVSNLTAMNVW 335


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +3

Query: 231 NRFDLDNGNESTESIYQNRSAQELW 305
           N F   NG  ST  +  N +A  +W
Sbjct: 362 NFFTTSNGFRSTLPVVSNLTAMNVW 386


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +3

Query: 231 NRFDLDNGNESTESIYQNRSAQELW 305
           N F   NG  ST  +  N +A  +W
Sbjct: 311 NFFTTSNGFRSTLPVVSNLTAMNVW 335


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = +1

Query: 88  INVTIQSLDGTLKLAIEVDN 147
           +++T+Q++D T  +   VDN
Sbjct: 188 VSLTVQAMDSTNTMVYMVDN 207


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,461
Number of Sequences: 438
Number of extensions: 3106
Number of successful extensions: 13
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15336375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)