Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0288
         (541 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g27090.1 68415.m03255 expressed protein contains Pfam domains...    30   0.86 
At5g48300.1 68418.m05966 glucose-1-phosphate adenylyltransferase...    30   1.1  
At5g35930.1 68418.m04322 AMP-dependent synthetase and ligase fam...    29   2.6  
At2g34170.1 68415.m04182 expressed protein contains Pfam profile...    29   2.6  
At2g22795.1 68415.m02704 expressed protein                             29   2.6  
At2g02480.1 68415.m00187 DNA polymerase-related weak similarity ...    29   2.6  
At4g26630.1 68417.m03837 expressed protein                             28   4.6  
At3g19300.1 68416.m02448 protein kinase family protein contains ...    28   4.6  
At5g32410.2 68418.m03816 hypothetical protein                          27   6.1  
At3g28770.1 68416.m03591 expressed protein                             27   6.1  
At2g27470.1 68415.m03320 CCAAT-box binding transcription factor ...    27   6.1  
At2g07710.1 68415.m00998 hypothetical protein                          27   6.1  
At2g46310.1 68415.m05760 AP2 domain-containing transcription fac...    27   8.0  
At2g15960.1 68415.m01827 expressed protein                             27   8.0  

>At2g27090.1 68415.m03255 expressed protein contains Pfam domains,
           PF04782: Protein of unknown function (DUF632) and
           PF04783: Protein of unknown function (DUF630)
          Length = 743

 Score = 30.3 bits (65), Expect = 0.86
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = +3

Query: 351 ECNWSYENEVNVSDEKLREENTGNGIISRTIRRESETASCEKDND 485
           E  W Y    +  D +    + GNG +SR+++ E  T   E D +
Sbjct: 170 EAPWDYFGLSHPIDNQFSSSHVGNGHVSRSVKEEDGTPEEEDDGE 214


>At5g48300.1 68418.m05966 glucose-1-phosphate adenylyltransferase
           small subunit 1 (APS1) / ADP-glucose pyrophosphorylase
           (ADG1) identical to SP|P55228
          Length = 520

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 15/56 (26%), Positives = 31/56 (55%)
 Frame = +3

Query: 363 SYENEVNVSDEKLREENTGNGIISRTIRRESETASCEKDNDIKPALLNIDPDSASS 530
           S+ + V  SD+K+  ++T + +    +RR     S +  +D + +   +DPD++SS
Sbjct: 34  SFSSSVTSSDDKISLKSTVSRLCKSVVRRNPIIVSPKAVSDSQNSQTCLDPDASSS 89


>At5g35930.1 68418.m04322 AMP-dependent synthetase and ligase family
           protein similar to iturin A synthetase C [Bacillus
           subtilis] GI:16040972; contains Pfam profile PF00501:
           AMP-binding enzyme
          Length = 1040

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 8/63 (12%)
 Frame = +3

Query: 372 NEVNVSDEKLREENTGNGIISRTIRRESETAS--------CEKDNDIKPALLNIDPDSAS 527
           N     D K+  +N GNG++SRT+   S   S        CEK+N   P  L ID +   
Sbjct: 568 NTTQKLDHKIESQN-GNGLVSRTVPLHSGVTSGPTPSKLQCEKNN--SPKRLKIDYEK-F 623

Query: 528 SPK 536
           SPK
Sbjct: 624 SPK 626


>At2g34170.1 68415.m04182 expressed protein contains Pfam profile:
           PF05097 protein of unknown function (DUF688)
          Length = 523

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 22/93 (23%), Positives = 41/93 (44%), Gaps = 3/93 (3%)
 Frame = +3

Query: 177 AVFFLGTRAHYQVLQRPENRFDLDNGNESTESIYQNRSAQELWPEGKMKDS---DNKNRV 347
           A  F GTR   +V++       + N ++S ES+Y   + Q+      M+ +   D++N  
Sbjct: 319 AAGFPGTRKEAEVMRANRLNKHIRNISKSHESLYPKSTKQDCSTSSAMEKTLYVDSENSP 378

Query: 348 KECNWSYENEVNVSDEKLREENTGNGIISRTIR 446
           +  N +  + V    E + EE    G   + +R
Sbjct: 379 RTSNENRSSNVKKLPETISEEPEMEGKKPKAVR 411


>At2g22795.1 68415.m02704 expressed protein
          Length = 734

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 21/96 (21%), Positives = 40/96 (41%), Gaps = 3/96 (3%)
 Frame = +3

Query: 249 NGNESTESIYQNRSAQELWPEGKMK-DSDNKNRVKECNWSYENEVNVSDEKLREENTGNG 425
           + NES E++      +E   E + K D D     KE + S   +    +   +EE+  NG
Sbjct: 629 SSNESQENVNTESEKKEQVEENEKKTDEDTSESSKENSVSDTEQKQSEETSEKEESNKNG 688

Query: 426 IISRTIRRESETASCEKDNDIKPALLNID--PDSAS 527
               T  +   ++      ++K    +++  PDS +
Sbjct: 689 ETEVTQEQSDSSSDTNLPQEVKDVRTDLETLPDSGN 724


>At2g02480.1 68415.m00187 DNA polymerase-related weak similarity to
           DNA polymerase III holoenzyme tau subunit [Thermus
           thermophilus] GI:2583049
          Length = 1218

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 22/96 (22%), Positives = 38/96 (39%)
 Frame = +3

Query: 249 NGNESTESIYQNRSAQELWPEGKMKDSDNKNRVKECNWSYENEVNVSDEKLREENTGNGI 428
           NG E  E   +   A   W +  + D D+ +  +    SY  E+  +    R  +T    
Sbjct: 101 NGKEEEE---EEEDASS-WTQASVNDDDDVSDARNGGDSYRREIQSASMGFRCRDTNLAS 156

Query: 429 ISRTIRRESETASCEKDNDIKPALLNIDPDSASSPK 536
              +  R+S   SC+K +  K +   +D  S   P+
Sbjct: 157 QGVSKMRKSNVGSCKKKSKKKISSSRLDCLSKYQPR 192


>At4g26630.1 68417.m03837 expressed protein
          Length = 763

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 8/90 (8%)
 Frame = +3

Query: 240 DLDNGNESTESIY---QNRSAQELWPEGKMKDSDNKNRVKECNWSYE--NEVNVSDEK-- 398
           D D G +  E +    +N+  + +  EGK K+   +N+ KE   +    +E  V DEK  
Sbjct: 189 DEDKGTDMDEKVENGDENKQVENV--EGKEKEDKEENKTKEVEAAKAEVDESKVEDEKEG 246

Query: 399 LREENTGNGIISRTIRR-ESETASCEKDND 485
             +EN    + S+  +  E E  + +K+++
Sbjct: 247 SEDENDNEKVESKDAKEDEKEETNDDKEDE 276


>At3g19300.1 68416.m02448 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 663

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 15/32 (46%), Positives = 17/32 (53%)
 Frame = -1

Query: 196 VPRKNTAPLPPVDICLNCQLRSLISKCHPVIG 101
           V R    PLPP D C NC L S IS    ++G
Sbjct: 138 VSRNCKLPLPPGDQCRNC-LNSSISYLRSLVG 168


>At5g32410.2 68418.m03816 hypothetical protein
          Length = 123

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 10/15 (66%), Positives = 14/15 (93%)
 Frame = -1

Query: 169 PPVDICLNCQLRSLI 125
           PP+DI L+CQL+SL+
Sbjct: 76  PPLDIILDCQLQSLL 90


>At3g28770.1 68416.m03591 expressed protein 
          Length = 2081

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 20/87 (22%), Positives = 37/87 (42%)
 Frame = +3

Query: 258 ESTESIYQNRSAQELWPEGKMKDSDNKNRVKECNWSYENEVNVSDEKLREENTGNGIISR 437
           E+T+    N   + +    K    +NK  VK    + E++ N + E+ +E    NG+ + 
Sbjct: 494 ETTKGENVNIQGESIGDSTKDNSLENKEDVKPKVDANESDGNSTKERHQEAQVNNGVSTE 553

Query: 438 TIRRESETASCEKDNDIKPALLNIDPD 518
               ++  A  +K ND    +   D D
Sbjct: 554 DKNLDNIGADEQKKNDKSVEVTTNDGD 580


>At2g27470.1 68415.m03320 CCAAT-box binding transcription factor
           subunit HAP3-related contains Pfam PF00808 :
           Histone-like transcription factor (CBF/NF-Y) and
           archaeal histone; similar to polymerase epsilon p17
           subunit (DNA polymerase epsilon subunit 3) (YB-like
           protein 1) (YBL1) (NF-YB-like protein) (SP:Q9JKP7)  [Mus
           musculus];
          Length = 275

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 19/89 (21%), Positives = 39/89 (43%)
 Frame = +3

Query: 219 QRPENRFDLDNGNESTESIYQNRSAQELWPEGKMKDSDNKNRVKECNWSYENEVNVSDEK 398
           Q+   +  +D   +  +   +N + +E    G  ++ +N N  ++ N     E N +DE+
Sbjct: 145 QKGARKSKIDEETKRNDEETENDNTEE--ENGNDEEDENGNDEEDENDDENTEENGNDEE 202

Query: 399 LREENTGNGIISRTIRRESETASCEKDND 485
             +ENT          +E E  S E++ +
Sbjct: 203 NDDENTEENGNDEENEKEDEENSMEENGN 231


>At2g07710.1 68415.m00998 hypothetical protein
          Length = 150

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 10/15 (66%), Positives = 14/15 (93%)
 Frame = -1

Query: 169 PPVDICLNCQLRSLI 125
           PP+DI L+CQL+SL+
Sbjct: 103 PPLDIILDCQLQSLL 117


>At2g46310.1 68415.m05760 AP2 domain-containing transcription
           factor, putative
          Length = 294

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +3

Query: 387 SDEKLREENTGNGIISRTIRRESETASCEKDNDIKPA 497
           +D    EEN    +  R  R   E   C++D++ KPA
Sbjct: 38  TDSSSDEENDNKSVAPRVKRYVDEIRFCDEDDEPKPA 74


>At2g15960.1 68415.m01827 expressed protein
          Length = 77

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 15/59 (25%), Positives = 28/59 (47%)
 Frame = +3

Query: 291 AQELWPEGKMKDSDNKNRVKECNWSYENEVNVSDEKLREENTGNGIISRTIRRESETAS 467
           A ELW  G+MK    K   +      +N  +V  ++ +      G+I++ IR ++E  +
Sbjct: 4   AMELWV-GEMKKMSEKINTRNPLMQRKNSTSVVSKQQQGSEEERGLINQKIREKNEAVT 61


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,322,775
Number of Sequences: 28952
Number of extensions: 232883
Number of successful extensions: 746
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 746
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1003808112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)