Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0285
(792 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23H4.03c |erv25||COPII-coated vesicle component Erv25 |Schiz... 66 7e-12
SPCC24B10.17 |emp24||COPII-coated vesicle component Emp24 |Schiz... 44 2e-05
SPBC16E9.09c |||COPII vesicle coat component Erp5/Erp6|Schizosac... 37 0.004
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p... 31 0.14
SPCC1322.16 |phb2||prohibitin Phb2|Schizosaccharomyces pombe|chr... 27 4.1
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr... 27 4.1
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 26 7.1
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos... 25 9.4
>SPAC23H4.03c |erv25||COPII-coated vesicle component Erv25
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 216
Score = 65.7 bits (153), Expect = 7e-12
Identities = 45/152 (29%), Positives = 72/152 (47%), Gaps = 6/152 (3%)
Frame = +1
Query: 223 CLKEELHANVLVAGEYDVTEIQG--QRVDYIIKDSKGHILSQKDTVTKGK-FSFVTENYD 393
CL+E + LV T G Q + +I DS G+ S V K +F +
Sbjct: 36 CLREYVGEKNLVIVNLKTTGNMGDGQTLSMMITDSSGNTHSSIQNVLGEKSVAFDVDASA 95
Query: 394 MFEVCFISKVPSERRGIPHQ---VSLDIKIGIEAKTYEGIGEAAKLKPMEVELKRLEDLS 564
M ++CF++ + H+ V L+ +G +A Y + +A L+P+E +++R D
Sbjct: 96 MLDICFLNTLTPGAIESEHKKRSVKLEFTVGADADDYSSLQKANNLEPVEADIRRARDFI 155
Query: 565 EAIVQDFTLMRKREEEMRDTNESTNNRVLFFS 660
E I ++ RE R+TNESTN RV F+
Sbjct: 156 EEIKGKIYYLQAREARFRNTNESTNERVKNFA 187
>SPCC24B10.17 |emp24||COPII-coated vesicle component Emp24
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 199
Score = 44.4 bits (100), Expect = 2e-05
Identities = 36/164 (21%), Positives = 67/164 (40%)
Frame = +1
Query: 199 SLAPNTHKCLKEELHANVLVAGEYDVTEIQGQRVDYIIKDSKGHILSQKDTVTKGKFSFV 378
+L P+ +C E L N ++ Y Q V I + G I+ Q+ + ++SF
Sbjct: 25 TLKPHQRECFYENLRNNDQMSVTYQTNVGGDQLVSMSIYNPAGQIMHQEVPNSMAQYSFT 84
Query: 379 TENYDMFEVCFISKVPSERRGIPHQVSLDIKIGIEAKTYEGIGEAAKLKPMEVELKRLED 558
+N + CF + S ++ + Y + P+ ++++L D
Sbjct: 85 VKNPGKYMYCFYNDALDGE-------SKEVLFNVHGVIYISDEDLDANNPLLGKVRQLHD 137
Query: 559 LSEAIVQDFTLMRKREEEMRDTNESTNNRVLFFSIFSDGVPLGV 690
+ + RE R+T ESTN+RV ++SI + + V
Sbjct: 138 TISKVKHEQEYFVARERIHRNTAESTNDRVKWWSILQTVILVSV 181
>SPBC16E9.09c |||COPII vesicle coat component
Erp5/Erp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 215
Score = 36.7 bits (81), Expect = 0.004
Identities = 26/115 (22%), Positives = 49/115 (42%)
Frame = +1
Query: 319 SKGHILSQKDTVTKGKFSFVTENYDMFEVCFISKVPSERRGIPHQVSLDIKIGIEAKTYE 498
+ H++ + D + F T N +C++S + L + + + K
Sbjct: 75 ANNHLIYKNDLRSNEAVRFTTTNEGTHRICYLSTSDGAWFSST-KTRLHVDLASDDKYNL 133
Query: 499 GIGEAAKLKPMEVELKRLEDLSEAIVQDFTLMRKREEEMRDTNESTNNRVLFFSI 663
+ K + + L E+I+ + L R RE RDT+ES N+RV+ ++I
Sbjct: 134 IASSEDEAKDLTDRVAALNTRLESILGEQMLQRSREMTFRDTSESANSRVVRWTI 188
>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1040
Score = 31.5 bits (68), Expect = 0.14
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = +1
Query: 277 TEIQGQRVDYIIKDSKGHILSQKDTVT-KGKFSFVTENYDMFEVCFISKVPSERRGI 444
T ++GQ++ YI+ D+ G++ ++ K K+S V E + FI+ + S G+
Sbjct: 259 TPLKGQKMHYIVCDTNGYLFGVYSSILGKNKWSLVMERLPIPPFDFITSLNSIHEGL 315
>SPCC1322.16 |phb2||prohibitin Phb2|Schizosaccharomyces pombe|chr
3|||Manual
Length = 279
Score = 26.6 bits (56), Expect = 4.1
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +1
Query: 481 EAKTYEGIGEAAKLKPMEVELKRLEDLSE 567
E + + IGEA K KP +EL++LE E
Sbjct: 226 EGRAAQLIGEAIKNKPGFIELRKLETARE 254
>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1471
Score = 26.6 bits (56), Expect = 4.1
Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 4/73 (5%)
Frame = -2
Query: 446 GIPLLSDGTLDIKQTSNIS*FSVTNENFPFVTVSFCDKMCPFESLII*STLCPCISVT-- 273
GI ++ L + Q+ + + N V +S C+ + PFE + + + PC
Sbjct: 1344 GISYVNSSLLPLMQSPLVFCLRKNDANDLDVILSVCNLLSPFEVVCLLNRYQPCAGENPL 1403
Query: 272 --SYSPATNTLAC 240
S+S A L+C
Sbjct: 1404 PKSFSKAVEALSC 1416
>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 425
Score = 25.8 bits (54), Expect = 7.1
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = +1
Query: 211 NTHKCLKEELHANVLVAGEY 270
NTH+C++ N + GEY
Sbjct: 258 NTHRCIERSTDCNCPICGEY 277
>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1649
Score = 25.4 bits (53), Expect = 9.4
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +1
Query: 529 MEVELKRLEDLSEAIVQDFTLMRKREEE 612
M++ L RLE LSE + F + KRE E
Sbjct: 654 MQILLPRLEQLSEFNSEKFKTVSKREVE 681
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,190,645
Number of Sequences: 5004
Number of extensions: 66581
Number of successful extensions: 165
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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