Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0285
(792 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g57620.1 68414.m06539 emp24/gp25L/p24 family protein similar ... 97 1e-20
At1g21900.1 68414.m02741 emp24/gp25L/p24 family protein similar ... 96 2e-20
At1g09580.1 68414.m01075 emp24/gp25L/p24 family protein similar ... 92 3e-19
At3g10780.1 68416.m01298 emp24/gp25L/p24 family protein similar ... 84 9e-17
At3g29070.1 68416.m03636 emp24/gp25L/p24 family protein similar ... 79 3e-15
At1g69460.1 68414.m07981 emp24/gp25L/p24 family protein similar ... 79 3e-15
At1g14010.1 68414.m01654 emp24/gp25L/p24 family protein similar ... 79 3e-15
At1g26690.1 68414.m03251 emp24/gp25L/p24 family protein similar ... 78 8e-15
At2g03290.1 68415.m00284 emp24/gp25L/p24 family protein similar ... 57 1e-08
At3g22845.1 68416.m02879 emp24/gp25L/p24 protein-related contain... 53 2e-07
At2g03040.1 68415.m00257 transmembrane protein-related low simil... 52 6e-07
At2g17440.1 68415.m02012 leucine-rich repeat family protein cont... 30 2.0
At5g37370.2 68418.m04490 pre-mRNA splicing factor PRP38 family p... 29 3.5
At5g37370.1 68418.m04489 pre-mRNA splicing factor PRP38 family p... 29 3.5
At3g60840.1 68416.m06806 microtubule associated protein (MAP65/A... 29 4.7
At2g37680.1 68415.m04621 phytochrome A specific signal transduct... 28 6.2
>At1g57620.1 68414.m06539 emp24/gp25L/p24 family protein similar to
SP|P49755 Transmembrane protein Tmp21 precursor (21 kDa
Transmembrane trafficking protein) {Homo sapiens};
contains Pfam profile PF01105: emp24/gp25L/p24 family
Length = 212
Score = 97.1 bits (231), Expect = 1e-20
Identities = 54/166 (32%), Positives = 89/166 (53%), Gaps = 4/166 (2%)
Frame = +1
Query: 193 MWSLAPNT-HKCLKEELHANVLVAGEYDVTEIQGQ---RVDYIIKDSKGHILSQKDTVTK 360
+W P+T KC+ EE+ +NV+V +Y V + V + G +L ++ T
Sbjct: 26 VWLTVPHTGSKCVSEEIQSNVIVLADYLVISEEHSIFPTVSVKVTAPYGTVLHHRENTTN 85
Query: 361 GKFSFVTENYDMFEVCFISKVPSERRGIPHQVSLDIKIGIEAKTYEGIGEAAKLKPMEVE 540
G+F+F T+ + CF + S +++D K GI AK ++ I K++ +E+E
Sbjct: 86 GQFAFTTQESGTYLACFEADAKSHGNK-DFSINIDWKTGIAAKDWDSIARKEKIEGVELE 144
Query: 541 LKRLEDLSEAIVQDFTLMRKREEEMRDTNESTNNRVLFFSIFSDGV 678
K+LE EAI ++ +R RE EMR +E TN+RV ++SI S G+
Sbjct: 145 FKKLEGAVEAIHENLIYLRNREAEMRIVSEKTNSRVAWYSIMSLGI 190
>At1g21900.1 68414.m02741 emp24/gp25L/p24 family protein similar to
SP|O35587 Transmembrane protein Tmp21 precursor (21 kDa
Transmembrane trafficking protein) {Mesocricetus
auratus}; contains Pfam profile PF01105: emp24/gp25L/p24
family
Length = 216
Score = 96.3 bits (229), Expect = 2e-20
Identities = 57/184 (30%), Positives = 99/184 (53%), Gaps = 6/184 (3%)
Frame = +1
Query: 145 YLVLLLSLIWHGTDAIMWSLAPNTH--KCLKEELHANVLVAGEYDVTEIQGQR----VDY 306
+L ++L + +W P T KC+ EE+ +NV+V +Y V + V
Sbjct: 12 FLTVVLFFLTVNYGEAIWLTIPTTGGTKCVSEEIQSNVVVLADYYVVDEHNPENTPAVSS 71
Query: 307 IIKDSKGHILSQKDTVTKGKFSFVTENYDMFEVCFISKVPSERRGIPHQVSLDIKIGIEA 486
+ G+ L ++ VT G+F+F T+ + CF S P + +D K+GI A
Sbjct: 72 KVTSPYGNNLHHQENVTHGQFAFTTQEAGNYLACFWID-SSHHLANPITLGVDWKMGIAA 130
Query: 487 KTYEGIGEAAKLKPMEVELKRLEDLSEAIVQDFTLMRKREEEMRDTNESTNNRVLFFSIF 666
K ++ + + K++ +E++L+RLE L +I ++ ++ RE EMR+ +E+TN+RV +FSI
Sbjct: 131 KDWDSVAKKEKIEGVELQLRRLEGLVLSIRENLNYIKDREAEMREVSETTNSRVAWFSIM 190
Query: 667 SDGV 678
S GV
Sbjct: 191 SLGV 194
>At1g09580.1 68414.m01075 emp24/gp25L/p24 family protein similar to
SP|P49755 Transmembrane protein Tmp21 precursor (21 kDa
Transmembrane trafficking protein) {Homo sapiens};
contains Pfam profile PF01105: emp24/gp25L/p24 family
Length = 217
Score = 92.3 bits (219), Expect = 3e-19
Identities = 54/185 (29%), Positives = 101/185 (54%), Gaps = 4/185 (2%)
Frame = +1
Query: 148 LVLLLSLIWHGTDAIMWSLAPNTHKCLKEELHANVLVAGEYDVTEIQGQRVDYI---IKD 318
L+ L+ ++ +A+ + P KC+ EE+ +NV+V +Y + + + I +
Sbjct: 17 LLFLVPVMIPVGEAVWLDVPPTGTKCVSEEIQSNVVVLADYLIISEDHEVMPTISVKVTS 76
Query: 319 SKGHILSQKDTVTKGKFSFVTENYDMFEVCFISKVPSE-RRGIPHQVSLDIKIGIEAKTY 495
G+ L + VT G+F+F T+ + CF + S + + +++D + GI AK +
Sbjct: 77 PYGNNLHNMENVTHGQFAFTTQESGNYLACFWADEKSHGNKNV--SINIDWRTGIAAKDW 134
Query: 496 EGIGEAAKLKPMEVELKRLEDLSEAIVQDFTLMRKREEEMRDTNESTNNRVLFFSIFSDG 675
I + K++ +E+E+++LE EAI ++ +R RE +MR +E TN+RV ++SI S G
Sbjct: 135 ASIAKKEKIEGVELEIRKLEGAVEAIHENILYLRNREADMRTMSEKTNSRVAWYSIMSLG 194
Query: 676 VPLGV 690
V + V
Sbjct: 195 VCIAV 199
>At3g10780.1 68416.m01298 emp24/gp25L/p24 family protein similar to
SP|O35587 Transmembrane protein Tmp21 precursor (21 kDa
Transmembrane trafficking protein) {Mesocricetus
auratus}; contains Pfam profile: PF01105 emp24/gp25L/p24
family; contains non-consensus TG acceptor splice site
at exon 3
Length = 217
Score = 84.2 bits (199), Expect = 9e-17
Identities = 54/180 (30%), Positives = 88/180 (48%), Gaps = 6/180 (3%)
Frame = +1
Query: 169 IWHGTDAIMWSLAPNTHKCLKEELHANVLVAGEY----DVTEIQGQRVDYIIKDSKGHIL 336
++ G +AI ++ + +C+ EE+ ANV+V +Y D G +D + G L
Sbjct: 20 LFPGVEAIWLTVPESGERCVYEEIQANVVVVLDYICIDDAFTQLGPTLDVRVTSPYGKEL 79
Query: 337 SQKDTVTKGKFSFVTENYDMFEVCFISKVPSERRGIPHQV--SLDIKIGIEAKTYEGIGE 510
+ VT G+ +F T F C + V SLD K+GI AK ++ + +
Sbjct: 80 YKIANVTHGQAAFTTSESGTFLACLAMHHDQSHHSVNSSVIVSLDWKMGIRAKDWDSVAK 139
Query: 511 AAKLKPMEVELKRLEDLSEAIVQDFTLMRKREEEMRDTNESTNNRVLFFSIFSDGVPLGV 690
K++ ME+E++R + + AI + +R RE MR+ NE TN RV + S GV + V
Sbjct: 140 KEKIEAMELEIRRSTEYASAIRANILYLRIREAYMREINEKTNTRVNQLGLMSLGVAIVV 199
>At3g29070.1 68416.m03636 emp24/gp25L/p24 family protein similar to
SP|Q28735 Transmembrane protein Tmp21 precursor (21 kDa
Transmembrane trafficking protein) {Oryctolagus
cuniculus}; contains Pfam profile: PF01105
emp24/gp25L/p24 family
Length = 204
Score = 79.4 bits (187), Expect = 3e-15
Identities = 44/188 (23%), Positives = 89/188 (47%), Gaps = 7/188 (3%)
Frame = +1
Query: 148 LVLLLSLIWHGTDAIMWSLAPNTHKCLKEELHANVLVAGEYDVTEIQ-------GQRVDY 306
+ +++ ++ +++ + KC+ +++ N + G Y + ++
Sbjct: 1 MTMMMMMVMRRGESMRLDMESGNTKCISDDIKTNYMTVGTYSIVNPNEGHHLPPSHKLFV 60
Query: 307 IIKDSKGHILSQKDTVTKGKFSFVTENYDMFEVCFISKVPSERRGIPHQVSLDIKIGIEA 486
+ KG + V GKF F E + CF++ P R V + K G+EA
Sbjct: 61 TVSSPKGKSHHHAENVESGKFVFTAEETGDYMTCFVA--PGYRPTAKFAVDFEWKSGVEA 118
Query: 487 KTYEGIGEAAKLKPMEVELKRLEDLSEAIVQDFTLMRKREEEMRDTNESTNNRVLFFSIF 666
K + I + ++ +EVE+++L D++E I ++ + +RE EM++ N STN+R+ S+
Sbjct: 119 KDWTTIAKRGQITMLEVEVRKLLDVTETIHEEMFQLIEREREMQELNRSTNSRMAALSLL 178
Query: 667 SDGVPLGV 690
S V + V
Sbjct: 179 SFVVTMSV 186
>At1g69460.1 68414.m07981 emp24/gp25L/p24 family protein similar to
SP|Q28735 Transmembrane protein Tmp21 precursor (21 kDa
Transmembrane trafficking protein) {Oryctolagus
cuniculus}; contains Pfam profile: PF01105:
emp24/gp25L/p24 family
Length = 214
Score = 79.4 bits (187), Expect = 3e-15
Identities = 46/190 (24%), Positives = 98/190 (51%), Gaps = 8/190 (4%)
Frame = +1
Query: 145 YLVLLLSLIWHG-TDAIMWSLAPNTHKCLKEELHANVLVAGEYDVTEI-QGQ------RV 300
+ +LL+ IW + ++ + L KC+ E++ +N + G+Y++ +GQ ++
Sbjct: 9 WTMLLILAIWSPISHSLHFDLHSGRTKCIAEDIKSNSMTVGKYNIDNPHEGQALPQTHKI 68
Query: 301 DYIIKDSKGHILSQKDTVTKGKFSFVTENYDMFEVCFISKVPSERRGIPHQVSLDIKIGI 480
+ + G+ + V G+F+F + CF + + + + + K G+
Sbjct: 69 SVKVTSNSGNNYHHAEQVDSGQFAFSAVEAGDYMACFTAV--DHKPEVSLSIDFEWKTGV 126
Query: 481 EAKTYEGIGEAAKLKPMEVELKRLEDLSEAIVQDFTLMRKREEEMRDTNESTNNRVLFFS 660
++K++ + + ++++ ME E+K L D +I ++ +R REEEM+D N STN ++ + S
Sbjct: 127 QSKSWANVAKKSQVEVMEFEVKSLLDTVNSIHEEMYYLRDREEEMQDLNRSTNTKMAWLS 186
Query: 661 IFSDGVPLGV 690
+ S V +GV
Sbjct: 187 VLSFFVCIGV 196
>At1g14010.1 68414.m01654 emp24/gp25L/p24 family protein similar to
SP|P49755 Transmembrane protein Tmp21 precursor (21 kDa
Transmembrane trafficking protein) {Homo sapiens};
contains Pfam profile PF01105: emp24/gp25L/p24 family
Length = 212
Score = 79.4 bits (187), Expect = 3e-15
Identities = 50/188 (26%), Positives = 89/188 (47%), Gaps = 7/188 (3%)
Frame = +1
Query: 148 LVLLLSLIWHGTDAIMWSLAPNTHKCLKEELHANVLVAGEYDVTEIQ-------GQRVDY 306
++L+LS++ T +I + L KC+ EE+HAN + G+Y + +V
Sbjct: 9 VLLILSILSPVTLSIRYELLSGHTKCISEEIHANAMTIGKYSIINPHEDHPLPSSHKVTV 68
Query: 307 IIKDSKGHILSQKDTVTKGKFSFVTENYDMFEVCFISKVPSERRGIPHQVSLDIKIGIEA 486
+ +G + D V G+FSFV + CF + + D + GI
Sbjct: 69 RVTSPQGTAYHESDGVESGQFSFVAVETGDYISCF--SAVDHKPETTLIIDFDWRTGIHT 126
Query: 487 KTYEGIGEAAKLKPMEVELKRLEDLSEAIVQDFTLMRKREEEMRDTNESTNNRVLFFSIF 666
K + + + ++++ ME E+K+L + I + +R REEEM + N +TN+++ + S
Sbjct: 127 KDWSNVAKKSQVETMEFEVKKLFETVNGIHDEMFYLRDREEEMHNLNIATNSKMAWLSFV 186
Query: 667 SDGVPLGV 690
S V L V
Sbjct: 187 SLAVCLSV 194
>At1g26690.1 68414.m03251 emp24/gp25L/p24 family protein similar to
SP|P49755 Transmembrane protein Tmp21 precursor (21 kDa
Transmembrane trafficking protein) {Homo sapiens};
contains Pfam profile PF01105: emp24/gp25L/p24 family
Length = 214
Score = 77.8 bits (183), Expect = 8e-15
Identities = 42/188 (22%), Positives = 96/188 (51%), Gaps = 7/188 (3%)
Frame = +1
Query: 148 LVLLLSLIWHGTDAIMWSLAPNTHKCLKEELHANVLVAGEYDVTEI-------QGQRVDY 306
++L L++ + ++ + L KC+ E++ +N + G+Y V Q ++
Sbjct: 11 ILLFLAISSQVSQSLHFELQSGRTKCISEDIKSNSMTVGKYTVVNPNEAHPSPQSHKISI 70
Query: 307 IIKDSKGHILSQKDTVTKGKFSFVTENYDMFEVCFISKVPSERRGIPHQVSLDIKIGIEA 486
+ S G+ + V G+F+F + C+ + + + + D + G+++
Sbjct: 71 RVTSSYGNTYHHAEDVESGQFAFTAVESGDYMACYTAV--DHKPEVTLSIDFDWRTGVQS 128
Query: 487 KTYEGIGEAAKLKPMEVELKRLEDLSEAIVQDFTLMRKREEEMRDTNESTNNRVLFFSIF 666
K++ + + ++++ ME ++KRL + +I ++ +R+REEEM++ N +TN+++ + S
Sbjct: 129 KSWSSVAKKSQVEVMEFDVKRLIETVNSIHEEMFYLREREEEMQNLNRATNSKMAWLSFL 188
Query: 667 SDGVPLGV 690
S V LGV
Sbjct: 189 SLFVCLGV 196
>At2g03290.1 68415.m00284 emp24/gp25L/p24 family protein similar to
SP|P49755 Transmembrane protein Tmp21 precursor (21 kDa
Transmembrane trafficking protein) {Homo sapiens};
contains Pfam profile PF01105: emp24/gp25L/p24 family
Length = 170
Score = 57.2 bits (132), Expect = 1e-08
Identities = 34/123 (27%), Positives = 62/123 (50%)
Frame = +1
Query: 322 KGHILSQKDTVTKGKFSFVTENYDMFEVCFISKVPSERRGIPHQVSLDIKIGIEAKTYEG 501
+G L + D V G+FSF + C + + + D K G+ +K +
Sbjct: 32 QGKNLHEADKVEAGQFSFTAYENGSYVACITAIDYKPETTLT--IDFDWKTGVHSKEWTN 89
Query: 502 IGEAAKLKPMEVELKRLEDLSEAIVQDFTLMRKREEEMRDTNESTNNRVLFFSIFSDGVP 681
+ + +++ ME ++K L D +I ++ +R+REEEM++ N STN+++ + S S V
Sbjct: 90 VAKKSQVDMMEYQVKTLMDTVISIHEEMYYLREREEEMQELNRSTNSKMAWLSFGSLVVC 149
Query: 682 LGV 690
L V
Sbjct: 150 LSV 152
>At3g22845.1 68416.m02879 emp24/gp25L/p24 protein-related contains
weak similarity to transmembrane protein (GI:1212965)
[Homo sapiens]
Length = 214
Score = 53.2 bits (122), Expect = 2e-07
Identities = 38/162 (23%), Positives = 75/162 (46%), Gaps = 7/162 (4%)
Frame = +1
Query: 199 SLAPNTHKCLKEE-LHANVLVAGEYDVTE------IQGQRVDYIIKDSKGHILSQKDTVT 357
S+ N +C++E L+ V+G + V + +D+ + G+I+ +
Sbjct: 29 SVTVNDEECVQEYVLYEGDTVSGNFVVVDHDIFWGSDHPGLDFTVTSPAGNIVQTLKGTS 88
Query: 358 KGKFSFVTENYDMFEVCFISKVPSERRGIPHQVSLDIKIGIEAKTYEGIGEAAKLKPMEV 537
KF F M++ CF + + P VS I +G ++ + + L P+ V
Sbjct: 89 GDKFEFKAPKSGMYKFCFHNPYST-----PETVSFYIHVGHIPNEHD-LAKDEHLDPVNV 142
Query: 538 ELKRLEDLSEAIVQDFTLMRKREEEMRDTNESTNNRVLFFSI 663
++ L + E++V + ++ R+ R TNEST RV+F+++
Sbjct: 143 KIAELREALESVVAEQKYLKARDTRHRHTNESTRKRVIFYTV 184
>At2g03040.1 68415.m00257 transmembrane protein-related low
similarity to SP|Q28735|TM21_RABIT Transmembrane protein
Tmp21 precursor (21 kDa Transmembrane trafficking
protein) (Integral membrane protein p23) {Oryctolagus
cuniculus}
Length = 166
Score = 51.6 bits (118), Expect = 6e-07
Identities = 35/160 (21%), Positives = 75/160 (46%), Gaps = 8/160 (5%)
Frame = +1
Query: 148 LVLLLSLIWHGTDAIMWSLAPNTHKCLKEELHANVLVAGEYDVTE--------IQGQRVD 303
L+L+++L+ T ++ + L + KC+ EE+H N + G+Y + ++
Sbjct: 9 LLLIIALLSPRTLSMRYELKSSKTKCIGEEIHENAMSIGKYFIVNPNEDHHPLPDSHKII 68
Query: 304 YIIKDSKGHILSQKDTVTKGKFSFVTENYDMFEVCFISKVPSERRGIPHQVSLDIKIGIE 483
+ +G L + D V G+FSF + C I+ + + + D K G+
Sbjct: 69 VKVMPPQGKNLHEADNVEAGQFSFTAYENGSYVAC-ITAI-DYKPETTLTIDFDWKTGVH 126
Query: 484 AKTYEGIGEAAKLKPMEVELKRLEDLSEAIVQDFTLMRKR 603
+K + + + +++ ME ++K L D +I ++ +R+R
Sbjct: 127 SKEWTNVAKKSQVDMMEYQVKTLMDTVISIHEEMYYLRER 166
>At2g17440.1 68415.m02012 leucine-rich repeat family protein
contains Pfam PF00560: Leucine Rich Repeats
Length = 526
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = +1
Query: 412 ISKVPSERRGIPHQVSLDIKIGIEAKTYEGIGEAAKLKPMEVELKRLEDLSEAI 573
+S +PS + H LD+ + E IG LK ++VE +E++ +I
Sbjct: 288 LSSLPSSFNRLIHLEELDLSSNSLSILPESIGSLVSLKKLDVETNNIEEIPHSI 341
>At5g37370.2 68418.m04490 pre-mRNA splicing factor PRP38 family
protein (SRL1) contains Pfam profile PF03371: PRP38
family
Length = 385
Score = 29.1 bits (62), Expect = 3.5
Identities = 21/62 (33%), Positives = 26/62 (41%), Gaps = 2/62 (3%)
Frame = +3
Query: 441 YSTSSKLRY*NRHRSKDL*RDRGGCKIEANGSGTEETRRPIRSYRSRFHTN--EEKRRRN 614
YS R R R KD R+RG + RR R Y SR N E+ R R+
Sbjct: 246 YSDRDSDRQREREREKDRERERGRDRYRERERDYGNDRRSRRDYDSRSRRNDYEDDRSRH 305
Query: 615 ER 620
+R
Sbjct: 306 DR 307
>At5g37370.1 68418.m04489 pre-mRNA splicing factor PRP38 family
protein (SRL1) contains Pfam profile PF03371: PRP38
family
Length = 393
Score = 29.1 bits (62), Expect = 3.5
Identities = 21/62 (33%), Positives = 26/62 (41%), Gaps = 2/62 (3%)
Frame = +3
Query: 441 YSTSSKLRY*NRHRSKDL*RDRGGCKIEANGSGTEETRRPIRSYRSRFHTN--EEKRRRN 614
YS R R R KD R+RG + RR R Y SR N E+ R R+
Sbjct: 254 YSDRDSDRQREREREKDRERERGRDRYRERERDYGNDRRSRRDYDSRSRRNDYEDDRSRH 313
Query: 615 ER 620
+R
Sbjct: 314 DR 315
>At3g60840.1 68416.m06806 microtubule associated protein
(MAP65/ASE1) family protein low similarity to protein
regulating cytokinesis 1 (PRC1) [Homo sapiens]
GI:2865521; contains Pfam profile PF03999: Microtubule
associated protein (MAP65/ASE1 family)
Length = 648
Score = 28.7 bits (61), Expect = 4.7
Identities = 25/103 (24%), Positives = 43/103 (41%), Gaps = 1/103 (0%)
Frame = +1
Query: 394 MFEVCFISKVPSERRGIPHQVSLDIKIGIEAKTYEGIGEAAKLKPMEVELKRLEDLSEAI 573
+ E+ + P+E + I H V+ I + T I A +K +E E+ RL +
Sbjct: 222 LLELWNLLDTPAEEQKIFHNVTCSIALTESEITEANILSVASIKRVEDEVIRLSKIKITK 281
Query: 574 VQDFTLMRKREEEMRDTNESTNNRVLFFSIFS-DGVPLGVWPP 699
+++ L ++ E E VL FS + + GV P
Sbjct: 282 IKEVILRKRLELEEISRKMHMATEVLKSENFSVEAIESGVKDP 324
>At2g37680.1 68415.m04621 phytochrome A specific signal transduction
component (PAT3) / far-red elongated hypocotyl protein 1
(FHY1) identical to phytochrome A specific signal
transduction component PAT3 [Arabidopsis thaliana]
gi|19421998|gb|AAL87850; identical to far-red elongated
hypocotyl protein 1 [Arabidopsis thaliana]
gi|17148773|gb|AAL35819
Length = 313
Score = 28.3 bits (60), Expect = 6.2
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +1
Query: 544 KRLEDLSEAIVQDFTLMRKREEEMRDTNESTNNRVLF 654
+ LED SE ++++ + ++EEE D ++N F
Sbjct: 258 QNLEDFSEKVIENILYLDEQEEEEEDAKGCSSNAAKF 294
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,332,948
Number of Sequences: 28952
Number of extensions: 335193
Number of successful extensions: 899
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 885
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1785055200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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