Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0283
         (733 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyc...    29   0.90 
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar...    28   1.2  
SPAC17G6.17 |pof8||F-box protein Pof8|Schizosaccharomyces pombe|...    27   2.1  
SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c...    26   4.8  
SPAP27G11.05c |vps41||vacuolar protein sorting-associated protei...    26   6.4  

>SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 372

 Score = 28.7 bits (61), Expect = 0.90
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
 Frame = -2

Query: 210 KFYAKYNTKKKYICNLI---FVQYRLLLFPYGYNLN*LQILNNFPNVWNN 70
           K+Y +     K +C +    F Q RLL   YG+ +   +I    P++WN+
Sbjct: 183 KYYWRVEPSTKLLCEVNKDPFRQLRLLNKTYGFVITLFEIGQTVPSLWNS 232


>SPAC6C3.06c |||P-type ATPase, calcium
           transporting|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1033

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = -3

Query: 308 YAYIFNLKYLILLSLFSIMQIMESSYLSTYI 216
           + Y +N+ Y +L+SL  ++  ++  YLSTYI
Sbjct: 113 FRYFYNM-YFLLVSLSQLIPPLKIGYLSTYI 142


>SPAC17G6.17 |pof8||F-box protein Pof8|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 402

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 11/53 (20%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = -2

Query: 369 KIHL-YILAQSHFWTFVI*TLLRLHIQFKVSYTLKPILHHANNGEQLFKHIHI 214
           K+HL +++ Q  FW  +     + ++++ +SY    + H  N+   + ++ +I
Sbjct: 90  KVHLAFLIQQDDFWKGIRPNPTQNNLKYALSYVTNALFHFDNSSHMVIRNENI 142


>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 649

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = -3

Query: 338 IFGRL*FEHCYAYIFNLKYL-ILLSLFSIMQIMESSYLSTYILINSMPN 195
           +FG       + YIF L  + +L+S F++ + +     ST+   NS PN
Sbjct: 167 LFGWFVSVDSFLYIFTLFPIRVLISFFTLSRCIFQGLFSTFFHRNSSPN 215


>SPAP27G11.05c |vps41||vacuolar protein sorting-associated protein
           Vps41|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 886

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -1

Query: 598 SLIFIYSFHLM*FLKIHTHIKFYTKMFYSLILAHNRF 488
           SL F+Y    M     H ++K ++++   LIL HN +
Sbjct: 509 SLAFLYLEDNMPIDAFHLYLKLHSELCIDLILQHNLY 545


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,938,574
Number of Sequences: 5004
Number of extensions: 61398
Number of successful extensions: 114
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)