Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0281
         (661 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.07 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         27   3.2  
SPAC823.04 |||rRNA processing protein, DUF947|Schizosaccharomyce...    27   3.2  
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    26   4.2  
SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter |Schizosa...    26   5.5  

>SPCC622.07 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 128

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +1

Query: 400 IFMYRREDINIMCYAFDVNGFFFSSIVYVRSVVYNGLVI 516
           IF++    ++I+CY  + NGF F   V++   V  G++I
Sbjct: 39  IFLFLNYVVDIVCYVKNYNGFSFFCWVFLNLGVI-GIII 76


>SPAC823.04 |||rRNA processing protein, DUF947|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 189

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = -1

Query: 523 GTRSLAHYIQHYVHRQSKKKKNHLHQKR 440
           GT++L  YI+    R+++K+K HL + R
Sbjct: 154 GTKALDKYIEKKRRRRAQKEKKHLPRAR 181


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
            protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = -2

Query: 222  HNISGNNSFTNIKNILITLSIRYVNTY*RLRLSLYHLTFNVLV*IVEELPLC 67
            H I  NNS  +I + LI L    V  Y  + +  YH   N++  ++E+   C
Sbjct: 1279 HYIESNNSAMHISDCLILLHEFLVQGYQGVDMHTYH---NIICILIEKAEKC 1327


>SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 514

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 6/67 (8%)
 Frame = -3

Query: 533 PSVRDTITSPLYT------TLRT*TIEEKKKPFTSKA*HIILISSRLYIKIYKRIYTGRT 372
           P V +T  +P +T      + +      KKKP T KA   I+ S R+Y      I++G T
Sbjct: 215 PDVPETTKAPYFTEQEKELSFKRLPARPKKKPLTLKAIKDIVRSWRIYGLCILWIFSGET 274

Query: 371 DIFLNNL 351
                N+
Sbjct: 275 QAIAVNV 281


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,473,261
Number of Sequences: 5004
Number of extensions: 45538
Number of successful extensions: 114
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)