Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0281
         (661 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    22   4.5  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   6.0  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   6.0  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   6.0  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   7.9  

>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -1

Query: 607 QLYGTNSTLHYIYYSIKAFCI 545
           +LYG NST+ ++    K+F +
Sbjct: 126 KLYGGNSTIIFLLIRFKSFSL 146


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +2

Query: 356 YLKKYQFVLYKSFCKFLCI 412
           +L++Y + L+K+    LCI
Sbjct: 322 WLEQYSWALFKAMSHMLCI 340


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +2

Query: 356 YLKKYQFVLYKSFCKFLCI 412
           +L++Y + L+K+    LCI
Sbjct: 290 WLEQYSWALFKAMSHMLCI 308


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -2

Query: 246 PRHTCYIGHNISGNNSFTNIKNIL 175
           PR+ C  GHN++  N F ++   L
Sbjct: 602 PRY-CLFGHNVTLANKFESLSEPL 624


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 6/8 (75%), Positives = 8/8 (100%)
 Frame = -2

Query: 261 SHLTHPRH 238
           +H+THPRH
Sbjct: 168 AHVTHPRH 175


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,806
Number of Sequences: 438
Number of extensions: 3527
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)