Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0281
         (661 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g56820.1 68418.m07090 F-box family protein contains F-box dom...    28   6.3  
At3g54310.1 68416.m06002 hypothetical protein predicted protein,...    27   8.4  

>At5g56820.1 68418.m07090 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 435

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -1

Query: 118 SPNFQCTSINSRGVASVYAQPRLIALKPN 32
           SPN Q   +N + + S+  QP +   KPN
Sbjct: 317 SPNLQTLKLNEKPLRSIKDQPNISVRKPN 345


>At3g54310.1 68416.m06002 hypothetical protein predicted protein,
           Arabidopsis thaliana
          Length = 358

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 580 EELNLYHIIVTRNSQPAVYIGCKVIS 657
           E   LYH+ V+ N++P V I CK ++
Sbjct: 179 ETKELYHVKVSDNTRPDVTISCKCMA 204


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,281,327
Number of Sequences: 28952
Number of extensions: 218043
Number of successful extensions: 545
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1383534864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)