Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0280
(756 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0824 - 32243495-32244319,32244449-32244859 85 8e-17
04_04_0619 + 26652923-26653267,26653440-26654273 71 1e-12
01_01_1152 + 9170628-9171899 68 7e-12
11_02_0011 - 7337618-7338496,7338596-7338991 66 4e-11
11_01_0767 + 6438648-6438809,6439146-6440000 64 2e-10
03_05_0293 + 22849103-22849513,22849670-22849756,22850156-228502... 64 2e-10
11_02_0012 - 7346282-7347136,7347234-7347593 63 2e-10
03_05_0296 + 22866280-22866282,22867178-22867444,22868363-22868869 62 6e-10
11_01_0750 - 6315126-6315896,6316371-6316784 59 3e-09
11_01_0771 + 6453130-6454488 56 4e-08
11_02_0014 - 7352619-7352918,7353173-7353418 55 7e-08
05_06_0044 - 25150322-25151260 38 0.009
08_01_0224 + 1789447-1789633,1789959-1790261,1793380-1793542,179... 30 2.3
08_01_0906 + 8933230-8933797,8933894-8934543,8937956-8938615,893... 29 3.0
05_05_0373 - 24478361-24479383 29 4.0
02_01_0384 - 2781362-2782299,2782320-2782428 29 4.0
12_01_0053 - 438527-438670,439038-439247,439401-439530,439672-43... 29 5.3
09_04_0752 + 19933604-19934278,19934679-19935387,19936118-199361... 28 7.0
01_06_0823 + 32234588-32234936,32236354-32237093,32237260-322373... 28 9.2
01_06_0373 - 28841462-28842850 28 9.2
>01_06_0824 - 32243495-32244319,32244449-32244859
Length = 411
Score = 84.6 bits (200), Expect = 8e-17
Identities = 57/167 (34%), Positives = 86/167 (51%), Gaps = 9/167 (5%)
Frame = +3
Query: 168 KSVVLSAFSVLPPLAQLALASDGETHEELLKAIG---FPDDDAIRTE-----FASKSRDL 323
K++ +S S+ LA L + GET ++++ +G P A+ + A S
Sbjct: 32 KNLAVSPLSLHAALALLGAGARGETLDQIIAFLGPAGGPAHAALASHVALCSLADDSGPG 91
Query: 324 RSIKGVELKMANKVYVHDGGKLDENFAVVSRDVFNSDVQNIDF-SKNTVAAKSINDWVEE 500
G +++ AN V+V +L +A V D + ++ + + F K A + IN+W E
Sbjct: 92 DDRGGPKVRFANGVWVDAALRLKAAYARVVADKYRAEARPVSFRDKLEEARREINEWFES 151
Query: 501 NTNNRIKDLVNPDSLSSATAAVLVNAIYFKGAWSSKFDERLTSDRDF 641
T RIKD + D++ AT AVL NA+YFKG W SKFD R TSD F
Sbjct: 152 ATAGRIKDFLPKDAVDRATPAVLGNALYFKGDWESKFDARSTSDDVF 198
>04_04_0619 + 26652923-26653267,26653440-26654273
Length = 392
Score = 70.5 bits (165), Expect = 1e-12
Identities = 42/149 (28%), Positives = 72/149 (48%), Gaps = 1/149 (0%)
Frame = +3
Query: 207 LAQLALASDGETHEELLKAIGFPDDDAIRTEFASKSRDLRSIKGVELKMANKVYVHDGGK 386
LA LA +DGET +LL +G + A ++R+ +L A ++V +
Sbjct: 33 LALLATGTDGETLRQLLAFLGSQHIHQLNAASAGLLAEMRAWP--QLSFAAGIFVDRSLR 90
Query: 387 LDENFAVVSRDVFNSDVQNIDFSKNT-VAAKSINDWVEENTNNRIKDLVNPDSLSSATAA 563
L F + + +++DF AA +N ++ + TN R+ + ++P + S+T
Sbjct: 91 LRPEFQSTAAAAHGAFPRSVDFQNQANAAAAEVNRFISQATNGRLNNTISPGTFGSSTKC 150
Query: 564 VLVNAIYFKGAWSSKFDERLTSDRDFLRE 650
VL NA++FK W KF+ T R F R+
Sbjct: 151 VLANAMHFKATWGRKFESYDTQRRRFHRQ 179
>01_01_1152 + 9170628-9171899
Length = 423
Score = 68.1 bits (159), Expect = 7e-12
Identities = 48/161 (29%), Positives = 76/161 (47%), Gaps = 2/161 (1%)
Frame = +3
Query: 165 GKSVVLSAFSVLPPLAQLALASDGETHEELLKAIGFPD-DDAIRTEFASKSRDLRSIKGV 341
G++ ++S S LA +A + GET ELL +G P + R+ LR +
Sbjct: 58 GRNFIVSPLSFHAALALVADGARGETQRELLGFLGSPSLAELHRSPTTRLVARLRHLPNT 117
Query: 342 ELKMANKVYVHDGGKLDENFAVVSRDVFNSDVQNIDFSKNTVAAKS-INDWVEENTNNRI 518
A V+V G L FA + + + + DF+ A+ +N +V + T I
Sbjct: 118 SF--ACGVWVDRGRALTPEFADAAASRYAAVAEPADFATQPEQARERVNAFVSDATEGLI 175
Query: 519 KDLVNPDSLSSATAAVLVNAIYFKGAWSSKFDERLTSDRDF 641
+D++ P+S+ S+T VL NA++FKG WS F T F
Sbjct: 176 RDVLPPNSVDSSTVVVLANAVHFKGTWSLPFHPSATFHAPF 216
>11_02_0011 - 7337618-7338496,7338596-7338991
Length = 424
Score = 65.7 bits (153), Expect = 4e-11
Identities = 49/165 (29%), Positives = 79/165 (47%), Gaps = 5/165 (3%)
Frame = +3
Query: 168 KSVVLSAFSVLPPLAQLALASDGETHEELLKAIGFP--DD--DAIRTEFASKSRDLRSIK 335
K++V S S+ LA +A + G T +ELL +G DD +++R D +
Sbjct: 31 KNLVFSPASLYAALALVAAGARGTTLDELLALLGAASLDDLEESVRRAVEVGLADESASG 90
Query: 336 GVELKMANKVYVHDGGKLDENFAVVSRDVFNSDVQNIDFSKNTVAA-KSINDWVEENTNN 512
G + A V+ + +L + + + + + +F + + K IN WV + TN
Sbjct: 91 GPRVSDACGVWHDETLELKPAYRAAAAGTYKAVTRAANFQRQPKRSRKKINKWVSKATNK 150
Query: 513 RIKDLVNPDSLSSATAAVLVNAIYFKGAWSSKFDERLTSDRDFLR 647
I +++ S+ TA VLVNAIYFKG WS+ F T+ F R
Sbjct: 151 LIPEILPDGSVHVDTALVLVNAIYFKGKWSNPFPRSSTTTGKFHR 195
>11_01_0767 + 6438648-6438809,6439146-6440000
Length = 338
Score = 63.7 bits (148), Expect = 2e-10
Identities = 31/76 (40%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Frame = +3
Query: 423 FNSDVQNIDFSKNTVAA-KSINDWVEENTNNRIKDLVNPDSLSSATAAVLVNAIYFKGAW 599
+ +DF + V A K IN WV T N I +++ P+S S T V+ NAIYFKG W
Sbjct: 42 YKGAASTVDFKNHPVEARKEINAWVARATKNLITEVIKPESQSVDTRHVVGNAIYFKGEW 101
Query: 600 SSKFDERLTSDRDFLR 647
+ FD+ T++R+F R
Sbjct: 102 LAPFDKSDTAEREFRR 117
>03_05_0293 +
22849103-22849513,22849670-22849756,22850156-22850284,
22850507-22851262,22853474-22854250
Length = 719
Score = 63.7 bits (148), Expect = 2e-10
Identities = 28/62 (45%), Positives = 38/62 (61%)
Frame = +3
Query: 456 KNTVAAKSINDWVEENTNNRIKDLVNPDSLSSATAAVLVNAIYFKGAWSSKFDERLTSDR 635
K A +N WVE+ T+ IK+++ P S+ T VL NA+YFKGAW+ KFD T D
Sbjct: 209 KAAEVASQVNSWVEKVTSGLIKEILPPGSVDHTTRLVLGNALYFKGAWTEKFDASKTKDG 268
Query: 636 DF 641
+F
Sbjct: 269 EF 270
Score = 60.5 bits (140), Expect = 1e-09
Identities = 25/54 (46%), Positives = 35/54 (64%)
Frame = +3
Query: 480 INDWVEENTNNRIKDLVNPDSLSSATAAVLVNAIYFKGAWSSKFDERLTSDRDF 641
+N WV+ T+ IK++ P S++ T VL NA+YFKGAW+ KFD T D +F
Sbjct: 469 VNSWVDRVTSGLIKNIATPRSINHNTKLVLANALYFKGAWAEKFDVSKTEDGEF 522
>11_02_0012 - 7346282-7347136,7347234-7347593
Length = 404
Score = 63.3 bits (147), Expect = 2e-10
Identities = 53/169 (31%), Positives = 82/169 (48%), Gaps = 5/169 (2%)
Frame = +3
Query: 156 NNPGKSVVLSAFSVLPPLAQLALASDGETHEELLKAIGFP--DD--DAIRTEFASKSRDL 323
+N ++VV S S+ LA +A + G T +EL+ +G DD +++R D
Sbjct: 27 DNSNRNVVFSPVSLYAALALVASGARGTTLDELVALLGAASLDDLEESVRRAVEVGLADE 86
Query: 324 RSIKGVELKMANKVYVHDGGKLDENFAVVSRDVFNSDVQNIDFSKNTVAA-KSINDWVEE 500
G + A V+ HD E A+ + + + DF + ++ K IN WV +
Sbjct: 87 SESGGPRVSYACGVW-HD-----ERLAL--KPAYRA----ADFQRQPKSSRKKINKWVSK 134
Query: 501 NTNNRIKDLVNPDSLSSATAAVLVNAIYFKGAWSSKFDERLTSDRDFLR 647
TN I++++ S+ TA VLVNAIYFKG WS+ F T+ F R
Sbjct: 135 ATNKLIREILPDGSVHGGTALVLVNAIYFKGKWSNPFPRERTTTGKFHR 183
>03_05_0296 + 22866280-22866282,22867178-22867444,22868363-22868869
Length = 258
Score = 61.7 bits (143), Expect = 6e-10
Identities = 26/57 (45%), Positives = 36/57 (63%)
Frame = +3
Query: 471 AKSINDWVEENTNNRIKDLVNPDSLSSATAAVLVNAIYFKGAWSSKFDERLTSDRDF 641
A +N WV+ T+ IK+++ P S+ T VL NA+YFKGAW+ KFD T D +F
Sbjct: 6 ASQVNSWVDRVTSGLIKEILPPGSVDHTTRLVLGNALYFKGAWTEKFDASKTKDGEF 62
>11_01_0750 - 6315126-6315896,6316371-6316784
Length = 394
Score = 59.3 bits (137), Expect = 3e-09
Identities = 46/167 (27%), Positives = 77/167 (46%), Gaps = 10/167 (5%)
Frame = +3
Query: 171 SVVLSAFSVLPPLAQLALASDGETHEELLKAIGFPDDD----AIRTEFASKS-----RDL 323
+ +SA +V LA A + G T ++L+A+G A AS+ RD
Sbjct: 33 NAAVSAPAVHVSLALAAGGARGATRRQVLQALGCGGGGRGGAADAANVASRVVKRVLRDR 92
Query: 324 RSIKGVELKMANKVYVHDGGKLDENFAVVSRDVFNSDVQNIDF-SKNTVAAKSINDWVEE 500
+ G L A V+ L F ++ +V+ S + DF +K A IN WV++
Sbjct: 93 STSGGPRLAFAGGVWADASRSLSPEFVGLAGNVYGSAAKKADFKNKPEDAPDQINSWVKD 152
Query: 501 NTNNRIKDLVNPDSLSSATAAVLVNAIYFKGAWSSKFDERLTSDRDF 641
+T + L+ ++ T VL +A+YF+G W + D R T+++ F
Sbjct: 153 STKGTVTTLLPAGTIDQNTGLVLGSALYFRGRWLDRDDLRRTTEQKF 199
>11_01_0771 + 6453130-6454488
Length = 452
Score = 55.6 bits (128), Expect = 4e-08
Identities = 30/87 (34%), Positives = 42/87 (48%)
Frame = +3
Query: 387 LDENFAVVSRDVFNSDVQNIDFSKNTVAAKSINDWVEENTNNRIKDLVNPDSLSSATAAV 566
+D ++ + + V ++ K A K IN W T I D++ P S+ TA V
Sbjct: 146 IDAFILLLDPSMIDQCVLDLVSEKAEEARKQINAWARRATGKLITDVLPPRSVGPETAVV 205
Query: 567 LVNAIYFKGAWSSKFDERLTSDRDFLR 647
L NAIYFKG W F+E T + F R
Sbjct: 206 LGNAIYFKGKWDRPFNESDTERKPFYR 232
>11_02_0014 - 7352619-7352918,7353173-7353418
Length = 181
Score = 54.8 bits (126), Expect = 7e-08
Identities = 26/58 (44%), Positives = 33/58 (56%)
Frame = +3
Query: 474 KSINDWVEENTNNRIKDLVNPDSLSSATAAVLVNAIYFKGAWSSKFDERLTSDRDFLR 647
K IN+WV + TN I +++ S+ T VLVNAIYFKG WS F T+ F R
Sbjct: 88 KKINEWVSKATNKLIPEILPDGSVHRLTTLVLVNAIYFKGKWSDPFPRESTTTGKFHR 145
>05_06_0044 - 25150322-25151260
Length = 312
Score = 37.9 bits (84), Expect = 0.009
Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 12/105 (11%)
Frame = +3
Query: 363 VYVHDGGKLDENFAVVSRDVFNSDVQNIDFSKNTVAAKS-INDWVEENTNNRIKDL---- 527
V+V +L+ FA + VF + V++ + N AA++ IN+W T +KD+
Sbjct: 3 VWVDASLRLNPAFADTAASVFKAAVRS---AGNPAAARAEINEWFSSQTGGFVKDILSNS 59
Query: 528 VNPDSLSS-------ATAAVLVNAIYFKGAWSSKFDERLTSDRDF 641
++ D S + + L N++YF W F LT + DF
Sbjct: 60 IDDDDDGSGGGGGAISASVFLANSLYFNAYWDHPFFPHLTEEGDF 104
>08_01_0224 +
1789447-1789633,1789959-1790261,1793380-1793542,
1793561-1793597,1794305-1794925
Length = 436
Score = 29.9 bits (64), Expect = 2.3
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = -2
Query: 359 IRHFKLNAFN*SKITAFTREFCSYSIVVREADSFQKLFMGFTIRS 225
+RH ++ +N + + FC+Y+I + D KL G I+S
Sbjct: 130 VRHREITEYNPKQFCSIPTRFCAYNIAFFDLDKESKLARGPPIKS 174
>08_01_0906 +
8933230-8933797,8933894-8934543,8937956-8938615,
8939751-8939817,8940421-8940724,8942993-8942996,
8944539-8946449
Length = 1387
Score = 29.5 bits (63), Expect = 3.0
Identities = 12/42 (28%), Positives = 28/42 (66%)
Frame = +3
Query: 276 DDDAIRTEFASKSRDLRSIKGVELKMANKVYVHDGGKLDENF 401
+++++ A+K+ ++ ++KG+E+ A K++ G LDE+F
Sbjct: 594 NEESVANYCATKNNNVWNVKGLEVTGAIKLFDQRWGNLDEDF 635
>05_05_0373 - 24478361-24479383
Length = 340
Score = 29.1 bits (62), Expect = 4.0
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +3
Query: 465 VAAKSINDWVEENTNNRIKDLVNPDSLSSATAAVLV 572
VA + +DW E + ++ D V PD+LSS AAV +
Sbjct: 153 VALREPHDWGESTAHAQL-DAVAPDALSSCDAAVFL 187
>02_01_0384 - 2781362-2782299,2782320-2782428
Length = 348
Score = 29.1 bits (62), Expect = 4.0
Identities = 20/56 (35%), Positives = 27/56 (48%)
Frame = -3
Query: 346 SSTPLIDRRSRLLLANSVRIASSSGKPIAFKSSSWVSPSEAKAN*ARGGSTENAER 179
S++P R+RL S +SG P +SSS SPS A RGG ++ R
Sbjct: 211 SASPASPSRTRLAPPRSPPAGGASGAPR--RSSSAASPSCAGVEGPRGGEVDDGRR 264
>12_01_0053 -
438527-438670,439038-439247,439401-439530,439672-439842,
440233-440355,440439-440543,440656-441332,441498-441604,
441970-442177,442178-442245,444209-444411,444580-444663,
444780-445109,445238-445438,445667-445744,446236-446306
Length = 969
Score = 28.7 bits (61), Expect = 5.3
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 294 TEFASKSRDLRSIKGVELKMANKVYVHDG 380
T+ S S+D++ ++ VE + N VHDG
Sbjct: 520 TQIPSASKDIKEVRAVEEFLPNDFVVHDG 548
>09_04_0752 +
19933604-19934278,19934679-19935387,19936118-19936161,
19936607-19936704,19937056-19937160,19937694-19937757,
19938316-19938885
Length = 754
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = -3
Query: 334 LIDRRSRLLLANSVRIASSSGK 269
LIDRR RLL NS A++SGK
Sbjct: 643 LIDRRRRLLEVNSAVAAAASGK 664
>01_06_0823 +
32234588-32234936,32236354-32237093,32237260-32237343,
32237909-32239263,32240399-32240460,32240544-32241144,
32241229-32241310,32241778-32241840
Length = 1111
Score = 27.9 bits (59), Expect = 9.2
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = +1
Query: 295 QNSRVKAVIFDQLKALSLKWRIKYTFMMVEN*TRILQSFPGTSSIRTSKTLISRRI 462
+N + K +FD+LKA LK +T + EN +L F + +K I R++
Sbjct: 679 KNKKDKDEVFDELKAAGLKRPCSFTDISSEN--ALLLEFETATDAAAAKAHIRRQL 732
>01_06_0373 - 28841462-28842850
Length = 462
Score = 27.9 bits (59), Expect = 9.2
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = +3
Query: 177 VLSAFSVLPPLAQLALASDGETHEELLKAIGFPDDDAIRTEFASKSRD 320
+L+ F LP L A+ GE EEL+ A G P A + RD
Sbjct: 125 ILAFFLYLPVLHAQTTANFGEMGEELVHAPGIPSFPATHSVLPLMERD 172
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,307,310
Number of Sequences: 37544
Number of extensions: 363703
Number of successful extensions: 1097
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1070
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1096
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -