Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0279
         (676 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch...    27   3.3  
SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces pombe...    26   5.7  
SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter M...    25   7.6  
SPAC25B8.13c |isp7||2-OG-Fe|Schizosaccharomyces pombe|chr 1|||Ma...    25   10.0 

>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
           Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 15/46 (32%), Positives = 18/46 (39%)
 Frame = +1

Query: 529 SGGGEYWGEYHGVKAKVYFRGAPYERDGRTYLKLQQLKLDFSVKDI 666
           S G E    Y    +  Y RG  Y R  R+Y K +      SV  I
Sbjct: 621 SSGSETGSTYSSSYSSTYSRGRSYSRSTRSYSKSRSYSRSRSVTPI 666


>SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 527

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 6/35 (17%)
 Frame = -1

Query: 211 VLNISLRIC------LHSFSAVSLSRSKTTPRIYA 125
           +LN+SLRIC      LH++   SL RS   P + A
Sbjct: 431 ILNLSLRICFALRFILHNYKDFSLPRSLPRPFLLA 465


>SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter
           Mfs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 531

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +1

Query: 247 FNNLVDYLKGGAPEMGIEEAEPIVIDELSIALGAGPD 357
           F  LV+Y  GG  ++ +E+   +  D  ++ L + PD
Sbjct: 9   FGELVEYFSGGTRQVDVEKL-GVCTDNSNVELSSCPD 44


>SPAC25B8.13c |isp7||2-OG-Fe|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 397

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +1

Query: 259 VDYLKGGAPEMGIEEAEPIVIDEL 330
           +DY+    P +G   AEPI +++L
Sbjct: 355 IDYVVAPLPGLGPSTAEPIAVEDL 378


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,632,263
Number of Sequences: 5004
Number of extensions: 53427
Number of successful extensions: 152
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)