Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0279
(676 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0041 + 281427-281549,281671-281730,281822-281868,282013-28... 32 0.48
04_04_1371 + 32995337-32995358,32995745-32995822,32995876-329960... 31 0.84
02_05_1206 + 34941293-34941562,34942052-34942153,34942249-349425... 31 1.1
06_03_0097 - 16607936-16608712,16610114-16610320,16611220-166113... 29 2.6
02_04_0057 - 19323218-19323420,19323546-19323945 29 2.6
11_06_0713 + 26524984-26525276,26526008-26526434,26526550-265271... 29 3.4
11_01_0482 - 3714442-3715593 29 3.4
06_03_0137 + 17066914-17067505,17067588-17067904 29 3.4
07_03_0797 + 21575948-21576042,21576140-21576902,21577134-215773... 28 5.9
07_01_1119 + 10331275-10331330,10331343-10331462,10332023-10332164 28 5.9
03_05_1139 - 30689514-30689609,30689795-30689956,30691245-306912... 28 5.9
10_08_0359 - 17167829-17169595,17169976-17169996 28 7.8
07_03_0015 - 12447947-12448393 28 7.8
05_01_0358 + 2808627-2809847 28 7.8
>05_01_0041 +
281427-281549,281671-281730,281822-281868,282013-282089,
285368-285440,286193-286281,286665-286711,286805-286885,
287011-287179,287381-287600,287679-287744,288194-288310,
288591-288628,288935-289032
Length = 434
Score = 31.9 bits (69), Expect = 0.48
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = -1
Query: 307 QPLRCPSQELLPSSSQRGC*NSLEDKRLRLDLVLNISLRIC--LHSFSAVSLS 155
+P+R PS+ + P Q GC + + LVL +SL +C +H+F + L+
Sbjct: 377 RPIRSPSRSISPRRDQEGC----SEVAVLEALVLRVSLGLCAMVHAFPTIKLA 425
>04_04_1371 +
32995337-32995358,32995745-32995822,32995876-32996019,
32997595-32997930,32998014-32998166,32998286-32998501,
32998600-33000695
Length = 1014
Score = 31.1 bits (67), Expect = 0.84
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +2
Query: 467 DLTSAPALGTAPQEFCCWSELQAAASTGANTMASRPRCTSAAL 595
DL+ G+ PQ+ C + ++ + N S PRC SA+L
Sbjct: 649 DLSGNHITGSIPQKICSLASIEILDLSNNNLSGSIPRCASASL 691
>02_05_1206 +
34941293-34941562,34942052-34942153,34942249-34942521,
34942863-34942913
Length = 231
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +1
Query: 514 LLVRASGGGEYWGEYHGVKAKVYFRGAPYERD 609
+L +SGGGE E G+ K+YF PY D
Sbjct: 41 VLEGSSGGGEAEAEAAGITTKLYFGNLPYNCD 72
>06_03_0097 -
16607936-16608712,16610114-16610320,16611220-16611336,
16611409-16611690,16611811-16612294,16612791-16612929,
16613138-16613243,16613396-16613562,16613632-16613707,
16614173-16614321,16614813-16614874,16615232-16615335,
16616856-16616950,16617046-16617136,16617785-16617922
Length = 997
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = +1
Query: 355 DGYRATFKDIHASGASNMTITNVRSDLETHQFQLTLYGPHISARARYRSS 504
DG +F+++HASG + + + + + DL F + P R R + S
Sbjct: 197 DGATESFEELHASGNTPVYVLHPKQDLHGLGFDPFKHAPEFKDRKRLQKS 246
>02_04_0057 - 19323218-19323420,19323546-19323945
Length = 200
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/28 (53%), Positives = 17/28 (60%)
Frame = +3
Query: 477 QRPRSVPLLRSSAAGQSFRRRRVLGRIP 560
QRPR+ P L + GQSFRR GR P
Sbjct: 39 QRPRTQPDLLAGLRGQSFRRGGGEGRAP 66
>11_06_0713 +
26524984-26525276,26526008-26526434,26526550-26527171,
26528059-26528099,26528181-26528249,26528565-26528665,
26529300-26529378,26529955-26530053,26530129-26530197,
26530326-26530375,26530482-26530548,26531031-26531125,
26534469-26534856
Length = 799
Score = 29.1 bits (62), Expect = 3.4
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = +3
Query: 492 VPLLRSSAAGQSFRRRRVLGRIPWRQGQGVLPRRSVRTRRTNLPEAATA 638
V +R GQ+ +R + +P R G P + RRT LP+AA A
Sbjct: 7 VKKIRELEEGQAELKREISRIVPERGGARRPPTLPAQQRRTALPQAAAA 55
>11_01_0482 - 3714442-3715593
Length = 383
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +1
Query: 445 QFQLTLYGPHISARA-RYRSSGVLLLVRASGGGE 543
+ + T Y PH SA+A + R LLVR GGG+
Sbjct: 154 EVEKTAYRPHQSAKAHQLREGSTGLLVRRGGGGD 187
>06_03_0137 + 17066914-17067505,17067588-17067904
Length = 302
Score = 29.1 bits (62), Expect = 3.4
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +1
Query: 466 GPHISARARYRSSGVLLLVRASGGGEYWGEYHGVKAKVYFRGAPYER-DGRTYLKLQ 633
G H +A AR R++ + +L RA GG G A+V G + R GR +L LQ
Sbjct: 97 GDHQAALARLRAAVLSVLARARRGGRRAGGGSSASARV-LTGTVFGRLRGRVHLALQ 152
>07_03_0797 +
21575948-21576042,21576140-21576902,21577134-21577327,
21577667-21577700,21578421-21578485,21579032-21579524
Length = 547
Score = 28.3 bits (60), Expect = 5.9
Identities = 17/41 (41%), Positives = 21/41 (51%)
Frame = +3
Query: 405 HDHH*RQVGPRDPSVPADAVRTSHQRPRSVPLLRSSAAGQS 527
HD H V P+ ADA + +RPR RS+A GQS
Sbjct: 303 HDVHQNVVAPKAGVAGADAEGRAVERPRLNLKPRSNAVGQS 343
>07_01_1119 + 10331275-10331330,10331343-10331462,10332023-10332164
Length = 105
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/55 (27%), Positives = 28/55 (50%)
Frame = +3
Query: 348 WSRRLQSNLQRHPCVRSIEHDHH*RQVGPRDPSVPADAVRTSHQRPRSVPLLRSS 512
+S R + +L+R + SI+ + + V RDP P+ A + + PLL+ +
Sbjct: 49 FSSRTKGSLKRRTALHSIKKKKYEKTVQQRDPKDPSRATKKKNNILALPPLLKDN 103
>03_05_1139 -
30689514-30689609,30689795-30689956,30691245-30691299,
30691695-30691959,30692749-30692959,30693542-30693721,
30693802-30693899,30694211-30694277,30694897-30694963,
30695335-30695447,30695988-30696032,30696116-30696223,
30696582-30696791,30697464-30697670,30697786-30697875,
30698168-30698389
Length = 731
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +1
Query: 343 GAGPDGYRATFKDIHASGASNMTITNVRSDLETHQFQLTLYG 468
GAG T A+ S+ + N R D+ T+ +QL YG
Sbjct: 139 GAGRGRGSKTVDQTRATSTSSAVVANGRHDILTNMYQLNPYG 180
>10_08_0359 - 17167829-17169595,17169976-17169996
Length = 595
Score = 27.9 bits (59), Expect = 7.8
Identities = 24/69 (34%), Positives = 30/69 (43%), Gaps = 5/69 (7%)
Frame = -2
Query: 501 GAVPSAGADVRSVQRQLELMGL*VRPDVSDGH--VRCS*RMDVFEGCSVTVGT---SS*G 337
G V + ++ R L GL VRP SD H VRC + V GC V +S G
Sbjct: 51 GVVETRALTDTTLLRSLAAKGLAVRPGASDEHHTVRCD-AVIVGSGCGGGVAAAVLASAG 109
Query: 336 YRQFVYHNG 310
Y+ V G
Sbjct: 110 YKVVVVEKG 118
>07_03_0015 - 12447947-12448393
Length = 148
Score = 27.9 bits (59), Expect = 7.8
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +1
Query: 526 ASGGGEYWGEYHGVKAKVYFRGAPYERDGR 615
A+GGG W + H + A RG+P E +GR
Sbjct: 113 AAGGGG-WRQCHRLPAGTRLRGSPRETEGR 141
>05_01_0358 + 2808627-2809847
Length = 406
Score = 27.9 bits (59), Expect = 7.8
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = +2
Query: 482 PALGTAPQEFCCWSELQAAASTGANTMASRP 574
P G APQ F L AAAS G +AS+P
Sbjct: 138 PRAGFAPQIFLSGDPLAAAASPGWMAIASQP 168
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,247,628
Number of Sequences: 37544
Number of extensions: 393672
Number of successful extensions: 1224
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1223
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -