Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0279
         (676 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22072| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.64 
SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22)            31   1.1  
SB_14296| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_52549| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_16328| Best HMM Match : Pentaxin (HMM E-Value=4.5e-08)              29   2.6  
SB_11770| Best HMM Match : Pollen_allerg_2 (HMM E-Value=3.2)           29   3.4  
SB_29455| Best HMM Match : Pentaxin (HMM E-Value=0.01)                 29   4.5  
SB_23647| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_6888| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.5  
SB_8083| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22)               28   6.0  
SB_41555| Best HMM Match : CXC (HMM E-Value=3.9)                       28   7.9  
SB_5369| Best HMM Match : wnt (HMM E-Value=2.9e-18)                    28   7.9  
SB_59006| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  
SB_33198| Best HMM Match : 7tm_1 (HMM E-Value=9.80909e-45)             28   7.9  

>SB_22072| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 642

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +3

Query: 420 RQVGPRDPSVPADAVRTSHQRPRSVPLLRSSAAGQSFR 533
           R+V    PSVP+    T H +PR V L+     GQ  R
Sbjct: 421 RRVPLTSPSVPSGTTSTDHSQPRRVQLVTMPVPGQMVR 458


>SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22)
          Length = 1058

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 21/81 (25%), Positives = 34/81 (41%)
 Frame = +1

Query: 145 FLIATVIPLKTNANIFGGKCSRQDPNVDACLLRSFNNLVDYLKGGAPEMGIEEAEPIVID 324
           F I  +     + N FG K S++       L+ + N LV  L    P + +   E +++D
Sbjct: 234 FRIHVLTKANASTNTFGAKSSKRFD----ILVTTPNRLVHLLTQEPPGIELHNVEWLILD 289

Query: 325 ELSIALGAGPDGYRATFKDIH 387
           E       G DG+R     I+
Sbjct: 290 EADKLFEEGKDGFREQIATIY 310


>SB_14296| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1141

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 23/90 (25%), Positives = 36/90 (40%)
 Frame = +2

Query: 353 PTVTEQPSKTSMRQEHRT*PSLTSGRT*RPISSS*RCTDLTSAPALGTAPQEFCCWSELQ 532
           P  T  P  T +  E  T P   +         +   +  T+AP   TAP+         
Sbjct: 491 PETTTAPEAT-LAPEATTAPEAATASLVTTAPETTTASLATTAPETTTAPETTTASLATT 549

Query: 533 AAASTGANTMASRPRCTSAALRTNATDELT 622
           A  +T A+ + + P  T+A+L T A +  T
Sbjct: 550 APETTTASLVTTAPEATTASLATTAPEATT 579



 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = +2

Query: 470 LTSAPALGTAPQEFCCWSELQAAASTGANTMASRPRCTSAALRTNATDELT 622
           +T+AP   TAP+         A  +T A+ + + P  T+A+L T A +  T
Sbjct: 144 VTTAPEATTAPETTTAPEATTAPETTTASLVTTAPETTTASLVTTAPEATT 194



 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = +2

Query: 467 DLTSAPALGTAPQEFCCWSELQAAASTGANTMASRPRCTSAALRTNATDELT 622
           + T+AP   TAP+         A  +T A+ + + P  T+A+L T A +  T
Sbjct: 281 EATTAPEATTAPEAATASLVTTAPEATTASLLTTAPETTTASLVTTAPEATT 332



 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +2

Query: 467 DLTSAPALGTAPQEFCCWSELQAAASTGANTMASRPRCTSAALRTNATDELT 622
           + T+AP   TAP+         A  +T A+   + P  T+A+L T A +  T
Sbjct: 696 EATTAPEATTAPEATTASLATTAPEATTASLATTAPETTTASLATTAPETTT 747



 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +2

Query: 467 DLTSAPALGTAPQEFCCWSELQAAASTGANTMASRPRCTSAALRTNAT 610
           + T+AP   TAP+         A  +T A+ + + P  T+A+L T A+
Sbjct: 155 ETTTAPEATTAPETTTASLVTTAPETTTASLVTTAPEATTASLATTAS 202



 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +2

Query: 473 TSAPALGTAPQEFCCWSELQAAASTGANTMASRPRCTSAALRTNAT 610
           T+AP   TAP+         A  +T A+ + + P  T+A+L T A+
Sbjct: 572 TTAPEATTAPETTTALLVTTAPETTTASLVTTAPEATTASLATTAS 617



 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = +2

Query: 470 LTSAPALGTAPQEFCCWSELQAAASTGANTMASRPRCTSAALRTNATDELT 622
           +T+AP   TAP+         A  +  A+ + + P  T+A+L T A +  T
Sbjct: 487 VTTAPETTTAPEATLAPEATTAPEAATASLVTTAPETTTASLATTAPETTT 537


>SB_52549| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 351

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = +1

Query: 277 GAPEMGIEEAEPIVIDELSIALGAGPDGYRATFKDIHASGASNMTITNV 423
           G   + +E++    + + SI LGA  DGY++ FK+       NMT  N+
Sbjct: 251 GEKALSMEDSLQCPLHDGSIVLGADQDGYQSKFKE---PFLGNMTAVNI 296


>SB_16328| Best HMM Match : Pentaxin (HMM E-Value=4.5e-08)
          Length = 253

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = +1

Query: 277 GAPEMGIEEAEPIVIDELSIALGAGPDGYRATFKDIHASGASNMTITNV 423
           G   + +E++    + + SI LGA  DGY++ FK+       NMT  N+
Sbjct: 124 GEKALSMEDSLQCPLHDGSIVLGADQDGYQSKFKE---PFLGNMTAVNI 169


>SB_11770| Best HMM Match : Pollen_allerg_2 (HMM E-Value=3.2)
          Length = 145

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -3

Query: 584 KYTLALTPWYSPQY-SPPPEALTSSRTPEER 495
           K ++A  P Y+  Y SPPP A+ S R+P  R
Sbjct: 13  KSSVASLPVYTASYPSPPPVAMASPRSPSPR 43


>SB_29455| Best HMM Match : Pentaxin (HMM E-Value=0.01)
          Length = 147

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = +1

Query: 277 GAPEMGIEEAEPIVIDELSIALGAGPDGYRATFKDIHASGASNMTITNV 423
           G   + +E++    + + SI LGA  DGY++ FK+       NMT  N+
Sbjct: 47  GEKALSMEDSLQRPLHDGSIVLGADQDGYQSKFKE---PFLGNMTAVNI 92


>SB_23647| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 70

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +3

Query: 318 DRRTVYSPRSWSRRLQSNLQRHPCVRSIEHDHH*RQVGPRDPSVPADA 461
           D  T Y   + ++RL++ +Q  P    +  +H     GPR P++P DA
Sbjct: 22  DALTTYIITNANKRLETKVQILPLTYGLPDEHD----GPRIPTIPGDA 65


>SB_6888| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1257

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = -3

Query: 593 APRKYTLALTPWYSPQYSPPPEALTSSRTPEERYRARALM*GPYS-VSW 450
           AP+ +  A T W+   YSP    LT+ R  +     R L   PY+ + W
Sbjct: 164 APKTHIYAETSWFLTVYSPNAFILTAKRRTKVLLVRRVLREVPYAFIKW 212


>SB_8083| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22)
          Length = 3445

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 23/87 (26%), Positives = 36/87 (41%)
 Frame = +2

Query: 347  LVPTVTEQPSKTSMRQEHRT*PSLTSGRT*RPISSS*RCTDLTSAPALGTAPQEFCCWSE 526
            + P  T  P +T++  E    P+ T+ R       +   ++ T AP    AP+       
Sbjct: 988  MAPEPTAAP-ETTVAPETTDAPATTAARETTAAPETTMASETTMAPEPTAAPETTVAPET 1046

Query: 527  LQAAASTGANTMASRPRCTSAALRTNA 607
              A A+T A    +RP  T A   T+A
Sbjct: 1047 TDAPATTLAPETTARPETTVAPETTDA 1073


>SB_41555| Best HMM Match : CXC (HMM E-Value=3.9)
          Length = 607

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = -1

Query: 385 GCL*RLL-CNRRDQLLGL*TVRLSQWAQPLRCPSQELLPSSSQRGC*NSLEDKRL 224
           GC  RL  C    +   L   + +Q A+PL C ++++    S+RGC +S   +R+
Sbjct: 534 GCNTRLTTCRPGGKATRLRARKCTQMARPLPCRAKKVTTPPSKRGCRHSRWPRRI 588


>SB_5369| Best HMM Match : wnt (HMM E-Value=2.9e-18)
          Length = 354

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 22/71 (30%), Positives = 32/71 (45%)
 Frame = +2

Query: 389 RQEHRT*PSLTSGRT*RPISSS*RCTDLTSAPALGTAPQEFCCWSELQAAASTGANTMAS 568
           ++ HR  P L+SG+T    S    C      P+   A +   CW+ L A    GA T  +
Sbjct: 116 KRHHRNFPELSSGKTLVKESMKLECR--CHGPSSSCATE--TCWNALPAFREIGAKT--N 169

Query: 569 RPRCTSAALRT 601
           +   TS  +RT
Sbjct: 170 KMIATSQRVRT 180


>SB_59006| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1211

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 23/92 (25%), Positives = 35/92 (38%)
 Frame = +2

Query: 347 LVPTVTEQPSKTSMRQEHRT*PSLTSGRT*RPISSS*RCTDLTSAPALGTAPQEFCCWSE 526
           + P  T +  +T+M  E    P  TS         +    + T+AP    AP+       
Sbjct: 647 MAPETTAE-IETTMTPETNAAPETTSAPETTAAPETTAAPETTAAPETTAAPETTAAPET 705

Query: 527 LQAAASTGANTMASRPRCTSAALRTNATDELT 622
             A  +T A+   + P  T+A   T A  E T
Sbjct: 706 TAAPETTSASETTAAPETTTAP-ETTAASETT 736


>SB_33198| Best HMM Match : 7tm_1 (HMM E-Value=9.80909e-45)
          Length = 762

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/25 (48%), Positives = 19/25 (76%)
 Frame = -1

Query: 658 LRRNLASAVAASGKFVRRVRTERRG 584
           ++R++ S  ++SGK VRRV T+R G
Sbjct: 337 VKRSMRSRSSSSGKTVRRVATKRAG 361


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,233,636
Number of Sequences: 59808
Number of extensions: 413707
Number of successful extensions: 1272
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1262
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)