Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0279
         (676 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024790-4|AAF60636.1|  121|Caenorhabditis elegans Hypothetical ...    30   1.7  
U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical p...    29   3.0  
AC024791-30|AAL32250.2| 2460|Caenorhabditis elegans Hypothetical...    29   4.0  
AF125960-4|AAD14738.1|  292|Caenorhabditis elegans Hypothetical ...    28   5.3  
AC024790-5|AAF60640.2|  119|Caenorhabditis elegans Hypothetical ...    27   9.2  

>AC024790-4|AAF60636.1|  121|Caenorhabditis elegans Hypothetical
           protein Y47D7A.7 protein.
          Length = 121

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
 Frame = -3

Query: 599 YGAPRKYTLA----LTPWYSPQYSPPPEALTSSRTPEE 498
           Y  P+KY +A     TP YS Q  P P A TSS   E+
Sbjct: 39  YPTPKKYPVAPTYPSTPSYSAQPPPAPSAYTSSDNQED 76


>U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical
            protein T19D12.1 protein.
          Length = 1844

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 21/73 (28%), Positives = 34/73 (46%)
 Frame = +2

Query: 350  VPTVTEQPSKTSMRQEHRT*PSLTSGRT*RPISSS*RCTDLTSAPALGTAPQEFCCWSEL 529
            V + T  PS T+         ++ S  T  P +++  C   T +   GT+  +    S  
Sbjct: 838  VSSTTTSPSTTTGSTPAPQSSTVASTTTVSPYTTT-ECICTTVSNTFGTSTTQGLTSSSA 896

Query: 530  QAAASTGANTMAS 568
            Q+ ASTG +T+AS
Sbjct: 897  QSTASTGVSTVAS 909


>AC024791-30|AAL32250.2| 2460|Caenorhabditis elegans Hypothetical
            protein Y47G6A.29 protein.
          Length = 2460

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = -3

Query: 590  PRKYTLALTPWYSPQYSPPPEALTSSRTP 504
            P K T A+TP +SP  +P P A+  +RTP
Sbjct: 1501 PDKSTTAITPIHSPANAPTPTAM--NRTP 1527


>AF125960-4|AAD14738.1|  292|Caenorhabditis elegans Hypothetical
           protein T12B3.4 protein.
          Length = 292

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = -1

Query: 592 RRGSTPWP*RHGIRPSTRRRLKL*PAAELLRSGTERGR 479
           +RG TP   R GI PST RR    P+  ++ SG +  R
Sbjct: 14  QRGDTPTKQRSGILPSTPRRTSP-PSGAIVSSGGDEKR 50


>AC024790-5|AAF60640.2|  119|Caenorhabditis elegans Hypothetical
           protein Y47D7A.2 protein.
          Length = 119

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = -3

Query: 599 YGAPRKYTLALTPWYSPQYSPPP--EALTSSRTPEE 498
           Y  P+KY +A T   +P YS PP   A +SS   E+
Sbjct: 39  YPTPKKYPVAPTYPSTPSYSAPPAQSAYSSSDNQED 74


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,855,040
Number of Sequences: 27780
Number of extensions: 313256
Number of successful extensions: 886
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 882
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)