Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0279
         (676 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    63   2e-12
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        22   4.7  
AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex det...    21   8.1  
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    21   8.1  
AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex det...    21   8.1  
AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex det...    21   8.1  
AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex det...    21   8.1  

>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 63.3 bits (147), Expect = 2e-12
 Identities = 44/186 (23%), Positives = 80/186 (43%), Gaps = 1/186 (0%)
 Frame = +1

Query: 118 IRMHKFVALFLIATVIPLKTNANIFGGKCSRQDPNVDACLLRSFNNLVDYLKGGAPEMGI 297
           IR      + ++A  + L  N  I      +++ N   C+  +  + V  L GG     I
Sbjct: 7   IRFFVLTTMLMMAIAVELPNNWRICDRSLPQKEYN--QCIAEAVRDAVVSLAGGLKSFKI 64

Query: 298 EEAEPIVIDELSIALGAGPDGYRATFKDIHASGAS-NMTITNVRSDLETHQFQLTLYGPH 474
              EP+ +D + I    G    R  +K+I   G + N+ I N   D +        Y P 
Sbjct: 65  LPIEPLAVDSVKIGESQGSVTLRQEYKNIKLYGLTKNLEIKNYNIDWDKCILSSESYNPQ 124

Query: 475 ISARARYRSSGVLLLVRASGGGEYWGEYHGVKAKVYFRGAPYERDGRTYLKLQQLKLDFS 654
           +   A Y+  G +LL+   G G+     + +K+        YE++G TYL++++  + F+
Sbjct: 125 VDFVADYKIEGKVLLLPVRGAGKSNITMYDLKSHNDIYCEKYEKNGETYLRIKKHAVKFN 184

Query: 655 VKDIKM 672
              +K+
Sbjct: 185 PAKVKL 190


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +1

Query: 214 DPNVDACLLRSFNNLVDYLKGGAPEMG 294
           DP +   LL+  N  V    GG P++G
Sbjct: 88  DPGMFPALLKDPNGNVVARNGGVPQLG 114


>AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +2

Query: 8   THYSRRG*TQRTLSRELKKKKK 73
           +HYSR     R  +RE +KK +
Sbjct: 229 SHYSRERSCSRDRNREYRKKDR 250


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +2

Query: 8   THYSRRG*TQRTLSRELKKKKK 73
           +HYSR     R  +RE +KK +
Sbjct: 229 SHYSRERSCSRDRNREYRKKDR 250


>AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +2

Query: 8   THYSRRG*TQRTLSRELKKKKK 73
           +HYSR     R  +RE +KK +
Sbjct: 229 SHYSRERSCSRDRNREYRKKDR 250


>AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +2

Query: 8   THYSRRG*TQRTLSRELKKKKK 73
           +HYSR     R  +RE +KK +
Sbjct: 229 SHYSRERSCSRDRNREYRKKDR 250


>AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +2

Query: 8   THYSRRG*TQRTLSRELKKKKK 73
           +HYSR     R  +RE +KK +
Sbjct: 218 SHYSRERSCSRDRNREYRKKDR 239


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,626
Number of Sequences: 438
Number of extensions: 3737
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20464920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)