Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0279
         (676 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g27380.1 68415.m03302 proline-rich family protein contains pr...    31   0.70 
At5g41410.1 68418.m05031 homeodomain protein (BEL1) identical to...    29   2.1  
At3g63270.1 68416.m07110 expressed protein                             28   5.0  
At5g38920.1 68418.m04707 hypothetical protein                          27   8.7  

>At2g27380.1 68415.m03302 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965
          Length = 761

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 13/23 (56%), Positives = 13/23 (56%)
 Frame = -3

Query: 599 YGAPRKYTLALTPWYSPQYSPPP 531
           YGAP  YT    P YSP   PPP
Sbjct: 49  YGAPPSYTTPPPPIYSPPIYPPP 71


>At5g41410.1 68418.m05031 homeodomain protein (BEL1) identical to
           cDNA homeobox protein (BEL1) GI:28202124
          Length = 611

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 20/67 (29%), Positives = 34/67 (50%)
 Frame = +3

Query: 426 VGPRDPSVPADAVRTSHQRPRSVPLLRSSAAGQSFRRRRVLGRIPWRQGQGVLPRRSVRT 605
           +G R+    A ++    + PR   L ++    +S+R+  ++   PWR  +G LP R+V T
Sbjct: 347 LGEREEDNRAVSIAARGETPRLRLLDQALRQQKSYRQMTLVDAHPWRPQRG-LPERAVTT 405

Query: 606 RRTNLPE 626
            R  L E
Sbjct: 406 LRAWLFE 412


>At3g63270.1 68416.m07110 expressed protein
          Length = 396

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/54 (25%), Positives = 27/54 (50%)
 Frame = +3

Query: 426 VGPRDPSVPADAVRTSHQRPRSVPLLRSSAAGQSFRRRRVLGRIPWRQGQGVLP 587
           + P D   P+D++   ++R   V  + ++A  Q     R+L ++ WR  +  LP
Sbjct: 284 ITPHDSDHPSDSMVAFNERHEKVRSVAATAFQQLKGSWRILSKVMWRPDRRKLP 337


>At5g38920.1 68418.m04707 hypothetical protein
          Length = 192

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -3

Query: 458 VSWN*WVSRSDLTLVMVMFDAPDAWMSLKVA 366
           + W  W +R+DL      FDAPD  + ++ A
Sbjct: 24  ILWRLWKNRNDLVFKGKQFDAPDMELGMQNA 54


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,098,112
Number of Sequences: 28952
Number of extensions: 295520
Number of successful extensions: 940
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 940
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)