Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0278
         (674 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|...   135   5e-33
SPBC776.18c |pmh1|mcr1|transcription factor TFIIH complex subuni...    26   5.7  
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom...    25   7.6  
SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa...    25   10.0 

>SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 387

 Score =  135 bits (327), Expect = 5e-33
 Identities = 75/192 (39%), Positives = 97/192 (50%)
 Frame = +3

Query: 48  YVLP*GQISFWGATVITNLLSAIPYLGTILVN*I*GGFAVDNATLTRFYTXXXXXXXXXX 227
           Y LP  Q+SFWGATVITNLLSA+P++G  LV+ + GGF+V N TL RF++          
Sbjct: 132 YCLPANQMSFWGATVITNLLSAVPFIGDDLVHLLWGGFSVSNPTLNRFFSLHYLMPFVIA 191

Query: 228 XXXXXXXXXXXQTGSNNPLGLNRNLDKIPFHPFFTFKDXXXXXXXXXXXXXXXXXNPYLL 407
                        GS+NPLG+  N+D+IP +P++  KD                 NPY  
Sbjct: 192 ALSVMHLIALHTNGSSNPLGVTANMDRIPMNPYYLIKDLITIFIFLIGINYMAFYNPYGF 251

Query: 408 GDPDNFTPANPLVTPVHIQPE*YFLFAYAILRSIPNKLGGVXXXXXXXXXXXXXPFTFKK 587
            +PD   PA+PL TP+ I PE Y L  YAILR+IPN   GV             P     
Sbjct: 252 MEPDCALPADPLKTPMSIVPEWYLLPFYAILRAIPNFQLGVIAMLLSILVLLLLPLLDFS 311

Query: 588 KIQGIQFYPINQ 623
            I+G  F P  +
Sbjct: 312 AIRGNSFNPFGK 323


>SPBC776.18c |pmh1|mcr1|transcription factor TFIIH complex subunit
           Pmh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 318

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = +2

Query: 26  NSNCFHRLCLTLRSNIFLGGNRNYKSIICNPLFR 127
           N  C+H++C +    IF  G     +  CN + R
Sbjct: 31  NPECYHKMCESCVDRIFTTGPAQCPTPGCNKILR 64


>SPBC713.04c |||U3 snoRNP-associated protein
           Utp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 854

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 12/50 (24%), Positives = 23/50 (46%)
 Frame = +2

Query: 5   NYNFIYTNSNCFHRLCLTLRSNIFLGGNRNYKSIICNPLFRNYISKLNLR 154
           +Y F + N      + L+  S + L  +   + I+CN L R+ +   N +
Sbjct: 47  SYTFPFENHKNISHIALSPTSTLLLSVDEEGRCILCNFLRRSVLHYFNFK 96


>SPBC418.02 |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +2

Query: 2   WNYNFIYTNSNCFHRLCLTLRSNIFLGGN 88
           WN      +SN  +RLC TL  + FL GN
Sbjct: 133 WNRLLQLDSSNLEYRLCFTL--SAFLSGN 159


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,850,426
Number of Sequences: 5004
Number of extensions: 28427
Number of successful extensions: 50
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)