Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0277
(621 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual 28 0.95
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 28 1.3
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual 27 1.7
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz... 27 1.7
SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr 2... 27 2.9
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S... 26 3.8
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb... 26 3.8
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 26 5.1
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 26 5.1
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo... 25 6.7
SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr ... 25 6.7
SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|c... 25 8.8
>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
Length = 815
Score = 28.3 bits (60), Expect = 0.95
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Frame = -1
Query: 450 LYFGF--FFWCRSQMVSFN--LFPFDIFECFLNELTSQSFVTFFHHMVDDFINERIKVNG 283
LY+ F F +S ++S++ LF F + F+ L SQSF+ V DFIN +
Sbjct: 171 LYYCFVQFMEVKSALISYDRSLFKFYPIDLFVL-LLSQSFICIIAFGVSDFIN--FQKEE 227
Query: 282 RRFRNR 265
R FR +
Sbjct: 228 RNFRGK 233
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 27.9 bits (59), Expect = 1.3
Identities = 28/114 (24%), Positives = 52/114 (45%)
Frame = +1
Query: 55 NVLIFFYRRLKNSSFNSSTRTLSKLQIRNYAKATSFPDYYQNPIFRKEDQVKLIADSDLK 234
N I +Y++L+ S + +S + + NY K + N + K +I + ++
Sbjct: 963 NSRIEYYKQLQEISDSLMPPPVSNISLNNYVKDDEKKQKFLNSVIIK---ASVILEKEIS 1019
Query: 235 NRATVPVKPPTVSETSSVYFDPLVNKVINHVMEKGNKRLARQLVEKAFENIKRK 396
K S+T++V LVN+ I+ + G+ L R+L E+ N +RK
Sbjct: 1020 E------KQDEASQTTNV--AELVNQKISEMNIPGHIHLLRELEEEK-SNTQRK 1064
>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 978
Score = 27.5 bits (58), Expect = 1.7
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Frame = +1
Query: 271 SETSSVYFDPLVNKVI---NHVMEKGNKRLARQLVEK 372
+E + VYFDPL+N ++ N V E ++ + LV K
Sbjct: 829 TEENQVYFDPLINSILHFANLVGEPATQKSSIALVSK 865
>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
Chs2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 926
Score = 27.5 bits (58), Expect = 1.7
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +1
Query: 52 SNVLIFFYRR-LKNSSFNSSTRTLSKLQIRNYAKATSFPDYYQN 180
+NVL Y LKN S ++ T +Q Y K S+ D+YQ+
Sbjct: 804 ANVLNSVYNSSLKNFSSSNDTSVYHDVQDHCYRKPQSYEDHYQD 847
>SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 470
Score = 26.6 bits (56), Expect = 2.9
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 6/41 (14%)
Frame = +1
Query: 379 ENIKRKQIERYHLASTPEEKA------KIELNPKDILYKAV 483
E + K +ER LAS+ EEK KI+L P ++L K V
Sbjct: 176 EGTRSKDVERQVLASSAEEKRLIFVINKIDLVPSEVLNKWV 216
>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1842
Score = 26.2 bits (55), Expect = 3.8
Identities = 10/37 (27%), Positives = 19/37 (51%)
Frame = +1
Query: 406 RYHLASTPEEKAKIELNPKDILYKAVENCKPLLQLQP 516
+YH+ P EK + K + + ++NCK ++ P
Sbjct: 448 QYHIDHCPAEKGETYQLAKTLGQQLIDNCKSVIDAPP 484
>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 952
Score = 26.2 bits (55), Expect = 3.8
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = +1
Query: 301 LVNKVINHVMEKGNKRLARQLVEKAFENIKRKQIERYHLASTPEEKAKIELN 456
LV+K N + +K N ARQL++K+ + + + + EEK I N
Sbjct: 264 LVSKHNNALEDKFNSEAARQLLQKSLSIVASNLKQAENKTISYEEKLSIAQN 315
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 25.8 bits (54), Expect = 5.1
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Frame = +1
Query: 172 YQNPIFRKEDQV-----KLIADSDLKNRATVPVKPPTVSETSSVYFDPLVNKVINH 324
++NP RK K+ + + K T PVKPP + ++ +F + N+V NH
Sbjct: 361 HKNPNLRKTGPTPGPKPKIKSSAPSKPAETAPVKPPRIELENTKWF--VENQVDNH 414
>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 780
Score = 25.8 bits (54), Expect = 5.1
Identities = 9/35 (25%), Positives = 21/35 (60%)
Frame = +1
Query: 307 NKVINHVMEKGNKRLARQLVEKAFENIKRKQIERY 411
N ++ HV+E + +++EK F NI + ++++
Sbjct: 658 NYLVQHVLELNIQPYTERIIEKFFGNICKLSLQKF 692
>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2244
Score = 25.4 bits (53), Expect = 6.7
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -1
Query: 408 SFNLFPFDIFECFLNELTSQSFVTFFHHMVDD 313
+F++ E ++ELTS+S FFH DD
Sbjct: 1605 NFSVIASSTNEVTISELTSESGCLFFHFEKDD 1636
>SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 727
Score = 25.4 bits (53), Expect = 6.7
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Frame = +1
Query: 229 LKNRA-TVPVKPPTVSETSSV-YFDPLVNKVINHVMEKGNKRLARQLVEKAFENIKRKQI 402
+K+RA + V + S + SV + P+ ++ N + E+ N A QL A I R +
Sbjct: 554 MKSRARSSSVSRRSRSRSLSVDIYPPITYEMQNELAEQCNYLSADQLSHVA--EILRAAL 611
Query: 403 ERYHLASTPEEKAKIELNPKDILYK 477
HL +T E + + P D+ YK
Sbjct: 612 P--HLRNTDEIEIDVSAMPPDVFYK 634
>SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 436
Score = 25.0 bits (52), Expect = 8.8
Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 2/101 (1%)
Frame = -1
Query: 498 WFAIFNGFI*NVLRI*LYFGFFFWCRSQMVSFNLFPFDIFECFLNELTSQSF--VTFFHH 325
+ A+F F+ + R+ +Y G FW + + F +F CFL + F + +
Sbjct: 322 YLALFRNFLNILKRMAIYCGACFW----VYACIFFLTRVF-CFLIDTPYPQFEKIPLEIY 376
Query: 324 MVDDFINERIKVNGRRFRNRRWLHRYSCSVLQIRICNEFHL 202
+ IN I G +F NR + ++L R + + L
Sbjct: 377 SIFAAINVYIIELGGKFSNRAKFNNLCSNILHFRALSAYSL 417
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,536,403
Number of Sequences: 5004
Number of extensions: 53578
Number of successful extensions: 194
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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