Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0277
(621 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_07_0176 - 13826764-13827064,13827271-13827377,13827474-138278... 32 0.42
11_06_0247 - 21669299-21669348,21669673-21670012,21670110-216701... 29 3.0
10_08_0210 - 15874289-15875663,15878248-15879263 29 3.0
01_01_0953 - 7472173-7472178,7472216-7472311,7472370-7472462,747... 28 5.2
03_02_0747 + 10888358-10888481,10888529-10888609,10889011-108892... 28 6.9
06_01_0268 + 1989069-1989293,1989938-1990020,1990136-1990357,199... 27 9.1
04_03_0129 - 11554917-11555033,11555470-11555613,11555807-115559... 27 9.1
02_05_0410 + 28744716-28744841,28745361-28745965,28746151-287462... 27 9.1
>10_07_0176 -
13826764-13827064,13827271-13827377,13827474-13827836,
13827912-13828079,13828153-13828374,13828784-13829023,
13829640-13829719,13829853-13830018,13830720-13830783,
13830861-13830962,13831085-13831227,13831370-13831474,
13831551-13831706,13832125-13832241,13832315-13832392,
13832466-13832550,13833334-13833455,13833546-13833611,
13835190-13835284,13835427-13835523,13835873-13835983,
13836083-13836164,13836292-13836353,13836620-13836685,
13838002-13838232
Length = 1142
Score = 31.9 bits (69), Expect = 0.42
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +2
Query: 281 LPFTLILSLIKSSTM*WKKVTNDWLVNSLRKHSKISKGNKLNDTIW 418
L L++SLIK + WK+ ND +N+ H + +G K T W
Sbjct: 131 LSLVLLVSLIKEAFEDWKRFQNDMSINN--AHVDVLQGQKWETTPW 174
>11_06_0247 -
21669299-21669348,21669673-21670012,21670110-21670199,
21670280-21670339,21670564-21670856,21671176-21671245,
21671623-21671970,21673188-21673318,21673418-21673901,
21674839-21675558
Length = 861
Score = 29.1 bits (62), Expect = 3.0
Identities = 26/97 (26%), Positives = 42/97 (43%)
Frame = +1
Query: 196 EDQVKLIADSDLKNRATVPVKPPTVSETSSVYFDPLVNKVINHVMEKGNKRLARQLVEKA 375
E+Q +L A S +R PV+ PTV+ T + +K N + E ++ R +
Sbjct: 490 EEQARLNAASSFSSRTEAPVE-PTVAGTLGETLE-ANSKYGNKLDENYENKMTRTVEAAR 547
Query: 376 FENIKRKQIERYHLASTPEEKAKIELNPKDILYKAVE 486
++ RK + LA EKA+ L + K E
Sbjct: 548 HADLVRKLEWKLQLAQKKIEKAERVLGKVETALKPTE 584
>10_08_0210 - 15874289-15875663,15878248-15879263
Length = 796
Score = 29.1 bits (62), Expect = 3.0
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = +2
Query: 95 ASIHLQEHYQNSKFEIMRRRQAFQTIIKIQYLEKKIK*NSLQIRI*R 235
+SIHL + + + + +R Q ++ YLE+ I NSL+IR+ R
Sbjct: 473 SSIHLSQQVKEAVVDSLRN-SVRQNLVLNNYLEQAISKNSLRIRLVR 518
>01_01_0953 -
7472173-7472178,7472216-7472311,7472370-7472462,
7472855-7473019,7473689-7474821,7474902-7475426,
7477077-7477249,7478737-7478831,7478893-7481688
Length = 1693
Score = 28.3 bits (60), Expect = 5.2
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +1
Query: 133 IRNYAKATSFPDYYQNPIFRK 195
++N +KA SFP+ Y+NP K
Sbjct: 567 VQNLSKALSFPESYENPYLMK 587
>03_02_0747 +
10888358-10888481,10888529-10888609,10889011-10889227,
10889350-10889460,10889615-10889660,10889744-10889853,
10889926-10890429,10891466-10891594,10891934-10892230,
10892322-10892680,10892968-10893016,10893124-10893184,
10893429-10893578,10893659-10893796,10894525-10894805,
10895005-10895050
Length = 900
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/26 (46%), Positives = 20/26 (76%)
Frame = +1
Query: 439 AKIELNPKDILYKAVENCKPLLQLQP 516
AK+E++P+DI+Y +EN +P+ QP
Sbjct: 407 AKVEVSPRDIVY--MENAEPINGEQP 430
>06_01_0268 +
1989069-1989293,1989938-1990020,1990136-1990357,
1990434-1990621,1990711-1990835,1990988-1991039,
1991585-1991874,1992229-1992307,1992527-1992657
Length = 464
Score = 27.5 bits (58), Expect = 9.1
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +1
Query: 418 ASTPEEKAKIELNPKDILYKAVENCKPLLQLQPHQEGW 531
+S P +A ++P KAVE CKP PH W
Sbjct: 324 SSLPLLRATFRVHPDAAAQKAVEGCKP---ADPHHPMW 358
>04_03_0129 -
11554917-11555033,11555470-11555613,11555807-11555999,
11556083-11556139,11556300-11556403,11556882-11556953,
11557069-11557187,11557639-11557783,11558527-11558672,
11558758-11558827,11559000-11559056,11559081-11559228,
11559311-11559432,11559649-11559845,11560296-11560350,
11560468-11560680,11561239-11561386,11561515-11561585,
11563286-11563316,11563532-11563623,11565621-11565688,
11567895-11568069
Length = 847
Score = 27.5 bits (58), Expect = 9.1
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -2
Query: 533 YHPS*WGCNCNNGLQFSTALYKMSL 459
Y+P WG N +G +S +Y SL
Sbjct: 343 YNPGFWGMNIEDGKNYSLVMYAKSL 367
>02_05_0410 +
28744716-28744841,28745361-28745965,28746151-28746270,
28746597-28746737,28748626-28749370
Length = 578
Score = 27.5 bits (58), Expect = 9.1
Identities = 19/58 (32%), Positives = 28/58 (48%)
Frame = +1
Query: 85 KNSSFNSSTRTLSKLQIRNYAKATSFPDYYQNPIFRKEDQVKLIADSDLKNRATVPVK 258
KNSS NSS+ S N + + ++Q P+ + E + A + ATVPVK
Sbjct: 387 KNSSSNSSSSGASSASKNNSSHSGYHHHHHQKPLVKAEPNDQSAAAT---TAATVPVK 441
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,866,810
Number of Sequences: 37544
Number of extensions: 292409
Number of successful extensions: 832
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 831
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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