Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0274
         (708 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q1Z3D7 Cluster: Putative uncharacterized protein; n=1; ...    33   6.9  
UniRef50_Q05FV6 Cluster: Putative uncharacterized protein; n=1; ...    33   6.9  

>UniRef50_Q1Z3D7 Cluster: Putative uncharacterized protein; n=1;
           Photobacterium profundum 3TCK|Rep: Putative
           uncharacterized protein - Photobacterium profundum 3TCK
          Length = 282

 Score = 33.1 bits (72), Expect = 6.9
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = -3

Query: 304 KMIYMQLSRNWLNKVKLDKV*TKGFYYHRHEYKKVKLDKV 185
           KM  + LS NW++K   DK+  K    H+   K  +LDKV
Sbjct: 190 KMEVVDLSMNWIHKDGEDKIDLKNATKHKSRAKSTRLDKV 229


>UniRef50_Q05FV6 Cluster: Putative uncharacterized protein; n=1;
           Candidatus Carsonella ruddii PV|Rep: Putative
           uncharacterized protein - Carsonella ruddii (strain PV)
          Length = 275

 Score = 33.1 bits (72), Expect = 6.9
 Identities = 19/59 (32%), Positives = 33/59 (55%)
 Frame = +2

Query: 62  LHVDHFSKNKAIKKFHFLRVYTSTRTHFFVFMSMIIKSFCLNFI*FNFFVFMSMIIKSF 238
           L++  F KN  +K    +++ +  + +F++F S II  F  +FI    F+F S+ IK F
Sbjct: 89  LNIYFFIKNCFLK----IKIISKNKINFYIFFSKIIFFFKYSFIKIICFLFCSLFIKFF 143


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 528,327,066
Number of Sequences: 1657284
Number of extensions: 9305086
Number of successful extensions: 17269
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 15442
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17226
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 56611575523
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)