Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0274
         (708 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0111 + 884501-884970,885069-885147,885530-885574,885838-88...    29   4.8  
06_01_0390 + 2802334-2802339,2802461-2802618,2802755-2802826,280...    28   6.3  
11_08_0095 - 28323425-28323494,28323577-28323657,28323744-283241...    28   8.4  

>03_01_0111 +
           884501-884970,885069-885147,885530-885574,885838-885903,
           886362-886420,886626-886701,886825-886956,887046-887153,
           887679-887733,887822-888042
          Length = 436

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +3

Query: 456 PQFKIEGSQKTGSLTFRNKITFLNNFKGILL*FP 557
           PQ  +EG +K G L  R+ +T L   KG+ +  P
Sbjct: 224 PQSMLEGKRKLGELFLRHGVTPLTPLKGLFIQAP 257


>06_01_0390 +
           2802334-2802339,2802461-2802618,2802755-2802826,
           2802967-2803114,2803234-2803503,2803741-2803904,
           2804184-2804236,2804302-2804496,2804597-2804694,
           2804787-2804891
          Length = 422

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -2

Query: 116 VRSETSLWPYFSKNDLH 66
           V   T+LWPYF+ N++H
Sbjct: 372 VNFHTALWPYFAHNNIH 388


>11_08_0095 -
           28323425-28323494,28323577-28323657,28323744-28324157,
           28324236-28324381,28325911-28326048,28326192-28326224
          Length = 293

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +3

Query: 342 VCTLVHAHIFFFFKLPTLLFYKYSFKFSSHWLVKRQ*LPQFK 467
           V  L+H  +FF   LP+LLF ++   F+ + + K+   P ++
Sbjct: 26  VTFLLHETVFFLSGLPSLLFERFGL-FAKYKIQKKSNTPSYQ 66


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,240,440
Number of Sequences: 37544
Number of extensions: 221632
Number of successful extensions: 341
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 315
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 341
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)