Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0273
(690 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0498 + 3734498-3734976,3736176-3736800 32 0.49
01_01_0839 - 6540971-6541978,6542076-6542240,6542330-6542419,654... 29 2.6
07_03_1153 + 24398122-24398747,24399326-24399542,24399741-244002... 29 3.5
03_02_0915 + 12360079-12360095,12360225-12361353 29 3.5
01_03_0256 + 14288885-14288936,14289362-14291335,14291648-142916... 29 3.5
07_01_0580 + 4316895-4317053,4317530-4318024,4318124-4319305 29 4.6
07_03_0706 + 20850634-20850830,20851401-20851576,20851706-20852253 28 6.1
06_02_0214 + 13141213-13143741 28 6.1
01_06_0725 + 31508156-31508277,31508950-31509118,31509311-315094... 28 6.1
09_04_0070 + 14308446-14308511,14308844-14309005,14309420-143094... 28 8.0
07_01_0724 + 5529642-5531141 28 8.0
>07_01_0498 + 3734498-3734976,3736176-3736800
Length = 367
Score = 31.9 bits (69), Expect = 0.49
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = -1
Query: 342 DVCSVSDNGVIGRIAQVIVDALPFLAVGGLARKV 241
D +D+GV+ IA +VD FLA GG+ R V
Sbjct: 26 DEAPAADDGVVEEIAIPVVDLAAFLASGGIGRDV 59
>01_01_0839 -
6540971-6541978,6542076-6542240,6542330-6542419,
6542536-6542736,6542886-6543098,6543216-6543461
Length = 640
Score = 29.5 bits (63), Expect = 2.6
Identities = 16/64 (25%), Positives = 29/64 (45%)
Frame = -1
Query: 606 LSFGLVVIDWFNLEDGDHPGELSELGLAVHVARGPEGNAVRVPPAAALVHWQGLRPGRDG 427
++F + ++ W LE G ELG A+ R V+ PA +++ + D
Sbjct: 102 MAFTVTMMAWSVLEYGKQMAAAGELGHAMDAVRWGADYFVKAHPAPNVLYGEVGDGDSDH 161
Query: 426 ICWR 415
+CW+
Sbjct: 162 VCWQ 165
>07_03_1153 +
24398122-24398747,24399326-24399542,24399741-24400220,
24400801-24401007,24401112-24401249,24401317-24401538
Length = 629
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Frame = +1
Query: 400 APDQRPPTD--PITPRPETLPMNQGCGWRNPDGVA 498
A D P TD P+ P+P T G WRNP A
Sbjct: 43 AADAAPATDAAPLPPKPSTGSPFYGENWRNPAAAA 77
>03_02_0915 + 12360079-12360095,12360225-12361353
Length = 381
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = +1
Query: 415 PPTDPITPRPETLPMNQGCGWRNPDGVAFRTTGDVDGETK 534
PP + I PM+QG G + D A T +VD E K
Sbjct: 42 PPAETIVELTTKKPMSQGGGGSSSDSGATSTGAEVDDEEK 81
>01_03_0256 + 14288885-14288936,14289362-14291335,14291648-14291673,
14291855-14292025,14292560-14292647,14292711-14292802,
14292920-14293384,14293860-14294633,14294890-14295087,
14296940-14297374,14297455-14297688,14298042-14298323
Length = 1596
Score = 29.1 bits (62), Expect = 3.5
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +1
Query: 517 VDGETKFGEFPWMVAILKVEPVDDNEP 597
+DGE EFP+ + VE DD+EP
Sbjct: 1197 LDGEESLAEFPYASFLQTVETSDDSEP 1223
>07_01_0580 + 4316895-4317053,4317530-4318024,4318124-4319305
Length = 611
Score = 28.7 bits (61), Expect = 4.6
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +1
Query: 97 NMDTGDLESIINQIFTSAKPPTQLQPVTQPSVADRAPSTLVP 222
N++ D + + + TS++ P L+P+ P+V AP P
Sbjct: 17 NVEASDDHAAFDAMATSSRRPPSLRPLRHPNVTSLAPVIFPP 58
>07_03_0706 + 20850634-20850830,20851401-20851576,20851706-20852253
Length = 306
Score = 28.3 bits (60), Expect = 6.1
Identities = 20/67 (29%), Positives = 26/67 (38%), Gaps = 4/67 (5%)
Frame = -1
Query: 627 PYVNVQLLSFGLV----VIDWFNLEDGDHPGELSELGLAVHVARGPEGNAVRVPPAAALV 460
P + +QL +G V V WF +L G G GN PPAAA
Sbjct: 164 PRIRMQLQEYGQVGDANVFYWFQNRKSRSKNKLRSGGTG-RAGLGLGGNRASEPPAAATA 222
Query: 459 HWQGLRP 439
H + + P
Sbjct: 223 HREAVAP 229
>06_02_0214 + 13141213-13143741
Length = 842
Score = 28.3 bits (60), Expect = 6.1
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = +1
Query: 571 VEPVDDNEPEGQKLNVYVGGGS--LIHPNVVLTAAHYVAAA 687
V P E G K+N GGGS LI P++V + A +AA+
Sbjct: 246 VNPSVTREVNGGKVNYMKGGGSTPLIAPDIVYSTATELAAS 286
>01_06_0725 +
31508156-31508277,31508950-31509118,31509311-31509406,
31510037-31510097,31510387-31510451,31511104-31511178,
31511276-31511351,31512140-31512303,31512398-31512421
Length = 283
Score = 28.3 bits (60), Expect = 6.1
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = +3
Query: 411 ETANRSHHAQAGDPA-NEPGLRLAEP*RRCLP 503
E RSHH D N+PG+R + RRC P
Sbjct: 53 EEDTRSHHEALLDRTKNKPGIRAVDVRRRCCP 84
>09_04_0070 +
14308446-14308511,14308844-14309005,14309420-14309473,
14310009-14310073,14310391-14310459,14310590-14310767,
14311085-14311231,14311316-14311432,14311507-14311619,
14311703-14311781,14311892-14312020
Length = 392
Score = 27.9 bits (59), Expect = 8.0
Identities = 17/56 (30%), Positives = 24/56 (42%)
Frame = +1
Query: 55 KLLFIGFLASACAQNMDTGDLESIINQIFTSAKPPTQLQPVTQPSVADRAPSTLVP 222
K+L FL Q + ++ ++ PPTQ P S A AP+T VP
Sbjct: 63 KVLENSFLVIMLRQGKGSSSSAPATSKAPSNQAPPTQTVPAAPASQAPVAPATTVP 118
>07_01_0724 + 5529642-5531141
Length = 499
Score = 27.9 bits (59), Expect = 8.0
Identities = 11/42 (26%), Positives = 22/42 (52%)
Frame = +1
Query: 361 SGPCSSYIDVCCLAPDQRPPTDPITPRPETLPMNQGCGWRNP 486
+ P ++++ C A D+ DP + RP+ + ++ GW P
Sbjct: 122 AAPFAAFLADACAAGDREGRPDPFSRRPDWVVVDFAHGWLPP 163
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,954,075
Number of Sequences: 37544
Number of extensions: 444535
Number of successful extensions: 1604
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1603
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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