Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0273
         (690 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g19900.1 68414.m02495 glyoxal oxidase-related contains simila...    32   0.31 
At1g75620.1 68414.m08786 glyoxal oxidase-related contains simila...    32   0.41 
At4g19830.1 68417.m02907 immunophilin / FKBP-type peptidyl-proly...    30   1.7  
At3g09000.1 68416.m01053 proline-rich family protein                   30   1.7  
At4g11860.1 68417.m01887 expressed protein contains Pfam domain ...    29   2.9  
At2g37810.1 68415.m04642 CHP-rich zinc finger protein, putative        29   2.9  
At5g47460.1 68418.m05861 pentatricopeptide (PPR) repeat-containi...    28   5.1  
At5g19090.2 68418.m02270 heavy-metal-associated domain-containin...    28   5.1  
At5g19090.1 68418.m02269 heavy-metal-associated domain-containin...    28   5.1  
At3g58600.1 68416.m06531 expressed protein hypothetical protein ...    28   5.1  
At3g54320.1 68416.m06003 ovule development protein, putative sim...    28   6.7  
At2g24800.1 68415.m02967 peroxidase, putative similar to peroxid...    28   6.7  
At5g19340.1 68418.m02305 expressed protein                             27   8.9  
At1g63910.1 68414.m07236 myb family transcription factor (MYB103...    27   8.9  

>At1g19900.1 68414.m02495 glyoxal oxidase-related contains
           similarity to glyoxal oxidase precursor [Phanerochaete
           chrysosporium] gi|1050302|gb|AAA87594
          Length = 548

 Score = 32.3 bits (70), Expect = 0.31
 Identities = 19/40 (47%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +1

Query: 433 TPRPETLPMNQGC--GWRNPDGVAFRTTGDVDGETKFGEF 546
           T RP T+  N  C  G   PDGV  +T GD DGE K   F
Sbjct: 101 TIRPLTVQSNTWCSSGSVRPDGVLVQTGGDRDGELKTRTF 140


>At1g75620.1 68414.m08786 glyoxal oxidase-related contains
           similarity to glyoxal oxidase precursor [Phanerochaete
           chrysosporium] gi|1050302|gb|AAA87594
          Length = 547

 Score = 31.9 bits (69), Expect = 0.41
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = +1

Query: 439 RPETLPMNQGC--GWRNPDGVAFRTTGDVDGETK 534
           RP T+  N  C  G   PDG   +T GD+DGE K
Sbjct: 107 RPLTVQSNTWCSSGGVTPDGTLLQTGGDLDGERK 140


>At4g19830.1 68417.m02907 immunophilin / FKBP-type peptidyl-prolyl
           cis-trans isomerase family protein similar to 70 kDa
           peptidylprolyl isomerase (Peptidylprolyl cis-trans
           isomerase) (PPiase) (Rotamase) (SP:Q43207) [Triticum
           aestivum]; FKBP-type peptidyl-prolyl cis-trans
           isomerase,Synechocystis sp., PIR2:S75144; contains Pfam
           PF00254: peptidyl-prolyl cis-trans isomerase, FKBP-type
          Length = 229

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +2

Query: 227 SLRTMTFRARPPTAKKGSASTITCAMRPITPLSLTEQTSSI 349
           SLR    R+  P++   S+ST+  A R    LS+   TSS+
Sbjct: 26  SLRIFASRSSAPSSSSSSSSTVAAASRRSISLSIIAVTSSV 66


>At3g09000.1 68416.m01053 proline-rich family protein
          Length = 541

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 28/93 (30%), Positives = 40/93 (43%), Gaps = 6/93 (6%)
 Frame = +2

Query: 191 SLIGLHRPWCLASLRTMTFRARPPTAKKGSASTITCAMRPITPLSLTEQTSSI*ESAVAR 370
           S+ GL RP    S R+ +   RP T  + S +  T   RP+T  +   ++S+    A   
Sbjct: 140 SVAGLRRPSSSGSSRSTS---RPATPTRRSTTPTTSTSRPVTTRASNSRSSTPTSRATLT 196

Query: 371 VHR--TSTSAVWLPTRD----RQQIPSRPGRRP 451
             R  TST+A    T      R   P+R   RP
Sbjct: 197 AARATTSTAAPRTTTTSSGSARSATPTRSNPRP 229


>At4g11860.1 68417.m01887 expressed protein contains Pfam domain
           PF04424: Protein of unknown function (DUF544)
          Length = 682

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 29/107 (27%), Positives = 54/107 (50%), Gaps = 6/107 (5%)
 Frame = +1

Query: 76  LASACAQNMDTGDLESIINQIFTSA---KPPTQLQP-VTQPSVADRAPSTLVPGVSTNDD 243
           + S+ A ++D G+LES  ++  + +        + P ++  S  D AP+  +P VST++ 
Sbjct: 371 VTSSEALSVDKGNLESAKSESSSESVLKSDAASIDPDLSCRSQHDDAPNAFIPPVSTDEP 430

Query: 244 LSCQTSDGQEGECVNYYLCNAANNTIITDGTNVIDIRVGS--GPCSS 378
           +     +G+  ECVN      A+   + +G +++  RV    G CSS
Sbjct: 431 M----YEGE--ECVNTVPPVCADKEPVYEGESLLGKRVEKDVGDCSS 471


>At2g37810.1 68415.m04642 CHP-rich zinc finger protein, putative
          Length = 233

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 3/62 (4%)
 Frame = +1

Query: 298 CNAANNTIITDGTNVIDIRVGSGPCSSYIDVCCL---APDQRPPTDPITPRPETLPMNQG 468
           C A+N  ++  G  ++  R   GPC   + V C+   AP    P   +    +  P N  
Sbjct: 131 CGASNTCMVCRGA-ILSWRYKCGPCMLDVHVECVNSSAPAATEPQMDLNTSQDPQPYNDE 189

Query: 469 CG 474
           CG
Sbjct: 190 CG 191


>At5g47460.1 68418.m05861 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 576

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -1

Query: 438 GRDGICWRSLVGSQTADVDVR*TRATADSYID 343
           G DG+ WR+L+G+ +A  D++  +  A   I+
Sbjct: 488 GYDGVAWRALLGACSARKDLKAAKTVAAKMIE 519


>At5g19090.2 68418.m02270 heavy-metal-associated domain-containing
           protein contains Pfam heavy-metal-associated domain
           PF00403; glycine-rich protein GRP22, rape, PIR:S31415;
           isoform contains a non-consensus TG-acceptor splice site
           at intron 3
          Length = 465

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 11/83 (13%)
 Frame = +1

Query: 436 PRPETLPMNQGCGW-RNPD--GVAFRTTGDVDGETKFGEFP--------WMVAILKVEPV 582
           P P ++PMN+      NP+   V F    D D E    EF              L+ +  
Sbjct: 188 PGPGSVPMNKNPQMPNNPNQKAVKFNVPDDDDEEDFSDEFDDEFDEDDDEFDDDLEDDEF 247

Query: 583 DDNEPEGQKLNVYVGGGSLIHPN 651
           DD+ P   K+   +GGG++I PN
Sbjct: 248 DDHPPPPNKMKPMMGGGNMIMPN 270


>At5g19090.1 68418.m02269 heavy-metal-associated domain-containing
           protein contains Pfam heavy-metal-associated domain
           PF00403; glycine-rich protein GRP22, rape, PIR:S31415;
           isoform contains a non-consensus TG-acceptor splice site
           at intron 3
          Length = 587

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 11/83 (13%)
 Frame = +1

Query: 436 PRPETLPMNQGCGW-RNPD--GVAFRTTGDVDGETKFGEFP--------WMVAILKVEPV 582
           P P ++PMN+      NP+   V F    D D E    EF              L+ +  
Sbjct: 188 PGPGSVPMNKNPQMPNNPNQKAVKFNVPDDDDEEDFSDEFDDEFDEDDDEFDDDLEDDEF 247

Query: 583 DDNEPEGQKLNVYVGGGSLIHPN 651
           DD+ P   K+   +GGG++I PN
Sbjct: 248 DDHPPPPNKMKPMMGGGNMIMPN 270


>At3g58600.1 68416.m06531 expressed protein hypothetical protein
           F21M11.17 - Arabidopsis thaliana, EMBL:AC003027
          Length = 302

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 18/55 (32%), Positives = 25/55 (45%)
 Frame = +1

Query: 115 LESIINQIFTSAKPPTQLQPVTQPSVADRAPSTLVPGVSTNDDLSCQTSDGQEGE 279
           +E+ I  I     PP  L PVT    A ++PS+L P +S       Q  D +  E
Sbjct: 220 IETTIPSIILPPPPPGPLSPVT---TAQKSPSSLPPSLSLQRSSEQQDLDTKREE 271


>At3g54320.1 68416.m06003 ovule development protein, putative
           similar to ovule development protein aintegumenta
           (GI:1209099) [Arabidopsis thaliana]
          Length = 427

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = +2

Query: 272 KGSASTITCAMRPITPLSLTEQTSSI*ESAVARVHRTSTSAVWLPTRDRQQIPSRP 439
           K   +T TC+  P + +S +  TSS  +S   R  R   +    P+ D+   P+ P
Sbjct: 2   KKRLTTSTCSSSPSSSVSSSTTTSSPIQSEAPRPKRAKRAKKSSPSGDKSHNPTSP 57


>At2g24800.1 68415.m02967 peroxidase, putative similar to peroxidase
           [Spinacia oleracea] gi|1781338|emb|CAA71496
          Length = 329

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +1

Query: 553 MVAILKVEPVDDNEPEGQKLNVYVGGGSLIHPNVVLTAAHYVAAA 687
           M A ++   +D +    + +N++   G  +H  VVL+ AH + AA
Sbjct: 155 MAANVRPNIIDTDFTVDKMINIFSSKGLSVHDLVVLSGAHTIGAA 199


>At5g19340.1 68418.m02305 expressed protein
          Length = 263

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +1

Query: 187 SVADRAPSTLVPGVSTNDDLSCQTSDGQEGECVN 288
           ++A+  PST  P +S + DLS   SDG +  C+N
Sbjct: 8   TMAEAEPSTTGPRISFSADLSSSDSDG-DFICIN 40


>At1g63910.1 68414.m07236 myb family transcription factor (MYB103)
           contains Pfam profile: PF00249 myb-like DNA-binding
           domain
          Length = 370

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 21/81 (25%), Positives = 31/81 (38%), Gaps = 1/81 (1%)
 Frame = +1

Query: 58  LLFIGFLASACAQNMDTGDLESI-INQIFTSAKPPTQLQPVTQPSVADRAPSTLVPGVST 234
           L F GF  S    N       +I I + F S KPP  +   T P +       ++   + 
Sbjct: 159 LHFDGFTDSPNQLNFTNDQETNIKIQETFFSHKPPLFMVDTTLPILEGMFSENIITNNNK 218

Query: 235 NDDLSCQTSDGQEGECVNYYL 297
           N+D       G+E  C   +L
Sbjct: 219 NNDHDDTQRGGRENVCEQAFL 239


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,690,080
Number of Sequences: 28952
Number of extensions: 305517
Number of successful extensions: 1017
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 963
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1016
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)