Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0272
         (790 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    37   0.50 
UniRef50_UPI00006A101B Cluster: Rho GTPase-activating protein 23...    35   2.0  
UniRef50_A3UKM7 Cluster: Esterase; n=1; Oceanicaulis alexandrii ...    33   8.2  

>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 37.1 bits (82), Expect = 0.50
 Identities = 16/22 (72%), Positives = 18/22 (81%)
 Frame = +3

Query: 270 CGPLSFSPDLLSWSRFRSGDRF 335
           C PLSFSPDLLS SRFR+G  +
Sbjct: 394 CCPLSFSPDLLSGSRFRTGAEY 415


>UniRef50_UPI00006A101B Cluster: Rho GTPase-activating protein 23
            (Rho-type GTPase-activating protein 23).; n=2; Xenopus
            tropicalis|Rep: Rho GTPase-activating protein 23
            (Rho-type GTPase-activating protein 23). - Xenopus
            tropicalis
          Length = 1178

 Score = 35.1 bits (77), Expect = 2.0
 Identities = 27/75 (36%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
 Frame = +3

Query: 528  ENKGRTVITSSCCVMFSSAE-----ILRAPSFN*VLQSLLQTLKKFCLCSFHSDTRWYGS 692
            ENKG  +I   CC            I R P  N V+ SL + L K    S   D RW   
Sbjct: 892  ENKGVPLIVELCCSQVEQKGLEYLGIYRVPGNNAVVSSLQEHLNKGLSESNIQDQRWQ-D 950

Query: 693  IPVVNLILQSFFNVL 737
            + VV+ +L+SFF  L
Sbjct: 951  LNVVSSLLKSFFRKL 965


>UniRef50_A3UKM7 Cluster: Esterase; n=1; Oceanicaulis alexandrii
           HTCC2633|Rep: Esterase - Oceanicaulis alexandrii
           HTCC2633
          Length = 609

 Score = 33.1 bits (72), Expect = 8.2
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +1

Query: 88  AIVLGDSSYTSVGAGNHYVMSDSSTSEG 171
           A+ LG +SY   G GN Y   DSST +G
Sbjct: 7   ALALGGASYAKPGDGNWYFFGDSSTGQG 34


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 784,252,037
Number of Sequences: 1657284
Number of extensions: 15691789
Number of successful extensions: 31062
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 30147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31055
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 67085240885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)