Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0272
         (790 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    24   1.2  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    24   1.2  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   4.9  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    22   6.4  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    22   6.4  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       21   8.5  

>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = +3

Query: 255 RSPGTCGPLSFSP 293
           RSPGT GPLS +P
Sbjct: 90  RSPGTPGPLSQAP 102


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = +3

Query: 255 RSPGTCGPLSFSP 293
           RSPGT GPLS +P
Sbjct: 246 RSPGTPGPLSQAP 258


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = +1

Query: 598  PQALTEFYKAFYKP 639
            P  + E+Y  +YKP
Sbjct: 1227 PNGIVEYYTVYYKP 1240


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -1

Query: 337 QNLSPDRKRDQLRRSGEKLSGPQV 266
           Q+L+ +R+RD+  R+     GPQ+
Sbjct: 495 QSLALNRRRDENPRNYRSDEGPQI 518


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -1

Query: 337 QNLSPDRKRDQLRRSGEKLSGPQV 266
           Q+L+ +R+RD+  R+     GPQ+
Sbjct: 495 QSLALNRRRDENPRNYRSDEGPQI 518


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -1

Query: 343 ASQNLSPDRKRDQLRR 296
           AS N  PD  +D LRR
Sbjct: 134 ASPNRKPDDNQDHLRR 149


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,775
Number of Sequences: 336
Number of extensions: 4049
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21376414
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)