Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0272
         (790 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0679 - 5550070-5550201,5550309-5550454,5550577-5551219           29   4.2  
02_05_0962 + 33114226-33114684,33114806-33114853,33115166-331152...    29   5.6  
06_01_0555 + 3952502-3954262                                           28   7.4  
08_01_0870 - 8491020-8491109,8491523-8491660,8492442-8492568,849...    28   9.7  

>11_01_0679 - 5550070-5550201,5550309-5550454,5550577-5551219
          Length = 306

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = +2

Query: 26  FLSFVSCPLLPHLQILTA*NQQ*CLEIVAIHLLGRVTITLC 148
           FL F SCP+L HL+I+         E ++   L R+ IT C
Sbjct: 168 FLDFSSCPVLEHLEIVLCSLSD--AERISSQSLKRLNITAC 206


>02_05_0962 +
           33114226-33114684,33114806-33114853,33115166-33115286,
           33115760-33116008,33116149-33116302,33116493-33116985,
           33117524-33117596,33118285-33118343
          Length = 551

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
 Frame = +1

Query: 7   DATGHFVSFVRFLSPTPSSPNTNCVKP---AIVLGDSSYTSVG 126
           D T   VS V  L+P  S+PNT+ + P     VL ++ Y SVG
Sbjct: 266 DCTNITVSNVTILAPISSAPNTDGIDPDSCQDVLIENCYISVG 308


>06_01_0555 + 3952502-3954262
          Length = 586

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = +3

Query: 615 VLQSLLQTLKKFCLCSFHSDTRWYGSIPV 701
           VL  LL TL+ FC  S ++ +RW+G++ V
Sbjct: 556 VLMLLLTTLQAFC--SVYTCSRWFGAVAV 582


>08_01_0870 -
           8491020-8491109,8491523-8491660,8492442-8492568,
           8492667-8492801,8493262-8493731
          Length = 319

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
 Frame = -1

Query: 388 AQTGGVASTGLT*SSASQNLSPDRKRDQLRRSG---EKLSGPQVPGDR*RKILLSLVGIN 218
           ++  G+A+ GL   +A       R R+ L R+G   + LS P     R    + +L+ I 
Sbjct: 92  SRAAGIAAAGLRAQAAEYRAEAARLREALERAGLARDALSPPAAVSARAVAAVANLLAIR 151

Query: 217 STRQRAIHVKSLKA*SLRR 161
            T   +  V S    SLRR
Sbjct: 152 DTEMSSFVVASADL-SLRR 169


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,228,007
Number of Sequences: 37544
Number of extensions: 438517
Number of successful extensions: 858
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 858
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)