Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0272
         (790 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    22   5.7  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   5.7  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   9.9  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   9.9  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   9.9  

>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 530 KQGSHSYHFLMLRNVLECRNT 592
           K   H+   L LRN+++ RNT
Sbjct: 83  KMAKHAAAELALRNIVQFRNT 103


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 11/41 (26%), Positives = 18/41 (43%)
 Frame = -2

Query: 204 VRFTSNLSRRNPFGGARVRHNVMVTRPNRCIATISKHYCWF 82
           +  T   +RRNP+      H+     PN  +   +K+Y  F
Sbjct: 413 LNLTVENNRRNPWFVEFWEHHFQCRYPNASVTPYNKNYTKF 453


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -2

Query: 699 LELIRTTECQSETNTGK 649
           LE   T  C S+TNTG+
Sbjct: 211 LEKFFTDYCNSKTNTGE 227


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -2

Query: 699 LELIRTTECQSETNTGK 649
           LE   T  C S+TNTG+
Sbjct: 211 LEKFFTDYCNSKTNTGE 227


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -3

Query: 749 KMLLQHIKERLQNQIH 702
           +MLL+H K R +  IH
Sbjct: 149 EMLLEHKKRRARRDIH 164


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 218,430
Number of Sequences: 438
Number of extensions: 4540
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24882285
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)