Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0272
         (790 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g30470.1 68415.m03711 transcriptional factor B3 family protei...    30   2.0  
At3g20460.1 68416.m02590 sugar transporter, putative similar to ...    28   6.1  
At2g37610.1 68415.m04614 hypothetical protein                          28   8.1  
At1g65780.1 68414.m07465 tRNA-splicing endonuclease positive eff...    28   8.1  

>At2g30470.1 68415.m03711 transcriptional factor B3 family protein
           low similarity to FUSCA3 [Arabidopsis thaliana]
           GI:3582518; contains Pfam profile PF02362: B3 DNA
           binding domain
          Length = 790

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 357 RPVLATPPV*AQGAHTRLGNADIASQGYQH 446
           RP ++TPPV ++ A  R+G   +  +G  H
Sbjct: 237 RPAISTPPVASKSAQARIGRPPVEGRGRGH 266


>At3g20460.1 68416.m02590 sugar transporter, putative similar to
           ERD6 protein [Arabidopsis thaliana] GI:3123712,
           sugar-porter family proteins 1 and 2 [Arabidopsis
           thaliana] GI:14585699, GI:14585701; contains Pfam
           profile PF00083: major facilitator superfamily protein
          Length = 488

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +2

Query: 683 VRINSSGEFDSAVVL*CVVEAFSLMHITFNFGT 781
           +R+N+ GE D  V L  +   F+ +  TF++GT
Sbjct: 37  IRVNNDGEEDGPVTLILLFTTFTALCGTFSYGT 69


>At2g37610.1 68415.m04614 hypothetical protein
          Length = 161

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +1

Query: 460 KRPALPQQRVPIVRLCMHPGSPLK 531
           K P  P+ R+PIVR C  P +P+K
Sbjct: 97  KTPTRPENRIPIVREC--PPAPMK 118


>At1g65780.1 68414.m07465 tRNA-splicing endonuclease positive
           effector-related contains similarity to SEN1, a positive
           effector of tRNA-splicing endonuclease [Saccharomyces
           cerevisiae] gi|172574|gb|AAB63976
          Length = 1065

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -2

Query: 192 SNLSRRNPFGGARVRHNVMVTRPNRCIATISKHYCWFHAVSIWR 61
           SN   R  F G R R NV++TR   C+  +       ++ S+WR
Sbjct: 783 SNGVGRVGFLGNRRRTNVLLTRARFCLWILGNEATLMNSKSVWR 826


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,995,338
Number of Sequences: 28952
Number of extensions: 347080
Number of successful extensions: 700
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 700
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1775300800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)