Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0271
         (675 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1685.07c |||amino acid transporter |Schizosaccharomyces pomb...    28   1.1  
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma...    28   1.4  
SPAC31G5.12c |maf1|n150|repressor of RNA polymerase III Maf1 |Sc...    26   5.7  
SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   10.0 
SPCC126.10 |iah1||isoamyl acetate hydrolytic enzyme Iah1 |Schizo...    25   10.0 
SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual             25   10.0 
SPBC3B9.09 |vps36||RBZ zinc finger protein Vps36|Schizosaccharom...    25   10.0 
SPAC3C7.10 |pex13||peroxin-13|Schizosaccharomyces pombe|chr 1|||...    25   10.0 
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa...    25   10.0 

>SPBC1685.07c |||amino acid transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -2

Query: 500 LSFPNTFFGR-VIGVPNSVTKSGLIPGRIIFVILALRFDCTFYFL 369
           ++  NT  G  ++ +PN+ TK+GL+ G +  V  A       YF+
Sbjct: 26  INLANTILGAGILSLPNAFTKTGLLFGCLTIVFSAFASFLGLYFV 70


>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 629

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 10/40 (25%), Positives = 25/40 (62%)
 Frame = +2

Query: 497 ITLVSLW*WYLVNNYQWYVCNQTNVNPGLFGMYIFVPNVF 616
           +++++++      NY W+   ++ + PG  G+Y+F+ +VF
Sbjct: 538 VSIITVYFQLCSENYNWWW--RSFITPGFCGIYVFIFSVF 575


>SPAC31G5.12c |maf1|n150|repressor of RNA polymerase III Maf1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 215

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 16/30 (53%), Positives = 18/30 (60%)
 Frame = +3

Query: 450 RVRDANNSTKKRIGKG*L*FLCGNGIW*II 539
           RV D+ NST   IG+G    L  NGIW II
Sbjct: 97  RVVDSVNSTLNNIGRG---RLSVNGIWEII 123


>SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 689

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 581 LFGMYIFVPNVFLSHLFNCSDTWYSCCWYS 670
           L G+   + N  LSH+FNCS  +     YS
Sbjct: 608 LGGLQCIIRNDNLSHIFNCSRKYIRVQRYS 637


>SPCC126.10 |iah1||isoamyl acetate hydrolytic enzyme Iah1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 246

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -2

Query: 500 LSFPNTFFGRVIGVPNSVTKSGLIPG 423
           +SF   +F R+  + +S+T+ G  PG
Sbjct: 30  VSFQKKYFNRLTIIGDSITQKGFTPG 55


>SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual
          Length = 629

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -2

Query: 548 TTDNYSPNTITTKKLKLSFPNTFFGRVIGVPNSVTKS 438
           TTD  +P     K L LS P   FG+   +   +++S
Sbjct: 298 TTDEETPELQNNKLLNLSTPKKSFGQTPRIKTELSES 334


>SPBC3B9.09 |vps36||RBZ zinc finger protein
           Vps36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 467

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -1

Query: 306 IFILKSENHSSSIFSVFMFIKSPS 235
           +F LK+ NHS  + S  + + +PS
Sbjct: 381 LFQLKTSNHSGKLLSAILEVMNPS 404


>SPAC3C7.10 |pex13||peroxin-13|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 288

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = -1

Query: 363 YFRHPKCRKKNLFKVSVFDIFILKSENHSSSIFSV 259
           +F+H K  + N  +   +D+F  +  NH +SI+S+
Sbjct: 150 FFKHSKIDEMNSQE---YDVFEKEEGNHKNSIYSI 181


>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +1

Query: 424 PGIKPDFVTELGTPITRPKNVLGKDNFSF 510
           P  +P  +TEL   I  PKN+    N+ F
Sbjct: 77  PSSQPQVITELENNIDIPKNIDAMQNWIF 105


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,823,619
Number of Sequences: 5004
Number of extensions: 60785
Number of successful extensions: 128
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)