Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0271
         (675 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF068718-5|AAC17768.1|  320|Caenorhabditis elegans Hypothetical ...    31   0.75 
U80447-10|AAB37814.1|  477|Caenorhabditis elegans Hypothetical p...    28   7.0  

>AF068718-5|AAC17768.1|  320|Caenorhabditis elegans Hypothetical
           protein R01B10.4 protein.
          Length = 320

 Score = 31.1 bits (67), Expect = 0.75
 Identities = 14/54 (25%), Positives = 28/54 (51%)
 Frame = -1

Query: 453 LCHKVRFDSRSDYLCNISVAV*LYILFSCMYFRHPKCRKKNLFKVSVFDIFILK 292
           L H ++     DY  N++  +   ++ +C+Y  H   RK+NL  +   DI +++
Sbjct: 204 LNHFMKMMQNFDYGYNMTCCIVFSLITTCLYVHHLYYRKRNLGSLQESDIVLIR 257


>U80447-10|AAB37814.1|  477|Caenorhabditis elegans Hypothetical
           protein F55F8.9 protein.
          Length = 477

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -3

Query: 184 SSNKKIVFLLRRYGQRTGLVPLN*SPFNEVLNSSLDF 74
           +++KKIVF  RRYG+R        S +   LN  L F
Sbjct: 217 ATHKKIVFKNRRYGRRISRNQNRFSSYGSTLNGDLLF 253


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,388,146
Number of Sequences: 27780
Number of extensions: 333849
Number of successful extensions: 698
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 698
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)