Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0269
         (745 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0526 - 20032206-20033106,20034853-20035181                       29   5.2  
08_02_1447 - 27162037-27162627,27162790-27162920,27163277-271634...    28   6.8  
04_04_1376 + 33058306-33059763,33059851-33059991,33060594-330606...    28   6.8  
11_04_0321 - 16359390-16359539,16359674-16359746,16360448-163608...    28   9.0  

>12_02_0526 - 20032206-20033106,20034853-20035181
          Length = 409

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = +2

Query: 71  SSSHDCNVLVNNRISESCFSSILNSSENV 157
           S+S+  N   NN IS SC  S++NSS N+
Sbjct: 329 SNSNKNNSDNNNNISSSCCISLMNSSSNM 357


>08_02_1447 -
           27162037-27162627,27162790-27162920,27163277-27163474,
           27164038-27164065
          Length = 315

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +2

Query: 86  CNVLVNNRISESCFSSILNSSENVTSITNLNIPYC 190
           CN     + SE C++S  +S+  +  +TN  +PYC
Sbjct: 190 CNA--TKKHSERCYASQGSSTNGLKRVTNPELPYC 222


>04_04_1376 +
           33058306-33059763,33059851-33059991,33060594-33060644,
           33061094-33061171,33061245-33061388,33061871-33062002
          Length = 667

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +2

Query: 113 SESCFSSILNSSENVTSITNLNIPYCCDLKTQVDESM 223
           ++S F +I +SS N +  TNL  P C  + + +DE +
Sbjct: 243 NDSIFHNIASSSHNPSPSTNLPSPNCLLVPSTLDEQL 279


>11_04_0321 -
           16359390-16359539,16359674-16359746,16360448-16360845,
           16360919-16362673,16362751-16362861,16363745-16363962,
           16364088-16364196
          Length = 937

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +2

Query: 77  SHDCNVLVNNRISESCFSSILNSSENVTSITNLNIPYCCDLKTQVDE 217
           SH C++ ++NR SE+   S  N   N T + N     CC + T  ++
Sbjct: 482 SHGCSMTLHNRNSEANHFSEQNIGRNRTEVQN----DCCSIPTSPND 524


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,401,809
Number of Sequences: 37544
Number of extensions: 239528
Number of successful extensions: 431
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 431
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)