Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0269
         (745 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59326| Best HMM Match : FtsX (HMM E-Value=2.2)                      31   0.99 
SB_5628| Best HMM Match : Complex1_LYR (HMM E-Value=3e-13)             30   2.3  
SB_13209| Best HMM Match : LRR_1 (HMM E-Value=1.7e-13)                 29   3.0  
SB_4423| Best HMM Match : 7tm_1 (HMM E-Value=5.5e-08)                  29   5.3  
SB_13149| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.2  

>SB_59326| Best HMM Match : FtsX (HMM E-Value=2.2)
          Length = 238

 Score = 31.1 bits (67), Expect = 0.99
 Identities = 13/42 (30%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = +2

Query: 245 LVISVALISFRVTLNVICVNKTIITNT*NYMLLIHYT--CHH 364
           ++I+  ++    T+ +I +  T ++ T +Y LL H+T  CHH
Sbjct: 188 IIIATTIVIIVTTIVIISITITCVSITCHYPLLFHHTTHCHH 229


>SB_5628| Best HMM Match : Complex1_LYR (HMM E-Value=3e-13)
          Length = 487

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
 Frame = +3

Query: 345 YIILVIMKIINHVGSFLLMFSNNLTFCNTLSVKSNIKNILMR*YR---RHNISLK 500
           + ++++M I + V  F+L  +  LT+CN+ ++ S I  +L R  R   R +ISLK
Sbjct: 429 FFVVMLMGIFSPVSGFVLYITIVLTYCNS-ALNSLIYGVLSRNCRRAMRSSISLK 482


>SB_13209| Best HMM Match : LRR_1 (HMM E-Value=1.7e-13)
          Length = 489

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 27/110 (24%), Positives = 53/110 (48%), Gaps = 5/110 (4%)
 Frame = +2

Query: 95  LVNNRISESCFSSILNSSENVTSITNLNIPYCCDLK-----TQVDESMYKK**YTLVISV 259
           L NNR+++    +I N     T++  LN+     L      T++ E++ KK     ++++
Sbjct: 310 LSNNRLTDRGILNIANGLNGNTTLEELNLNRNPALNGDRGVTKLAENIKKK--QCALMNL 367

Query: 260 ALISFRVTLNVICVNKTIITNT*NYMLLIHYTCHHEDNKSRRLFFINVFK 409
            ++  R+  + + + K  ++   N ML I Y C  +D  S +   IN F+
Sbjct: 368 KIVDVRIGSDCVKLLKQCLSE--NEMLNIDYGCKKKDTFSSKKAEINPFE 415


>SB_4423| Best HMM Match : 7tm_1 (HMM E-Value=5.5e-08)
          Length = 1167

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 18/75 (24%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
 Frame = +2

Query: 131  SILNSSENVTSITNLNIPYCCDLKTQVDESMYKK**YTLVISVALISFRVTLNVICVNKT 310
            S +  + +V  IT   +  CCD   +++ +MY     +LV++  +I+   T + + + K+
Sbjct: 1044 SEMTCASHVGRITLTRLNRCCDKSNKINSAMYPFSAASLVLNGIVIAVAATTSSLRLRKS 1103

Query: 311  I----ITNT*NYMLL 343
                 + NT NY ++
Sbjct: 1104 SQQAGVQNTVNYKII 1118


>SB_13149| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 257

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = -2

Query: 504 YLLKIYYVFYIISLKYFLY*ILHLVYYKRLSYL 406
           Y  +I Y+ +++      Y +LH++YY R++YL
Sbjct: 74  YYARIPYLLHVMYCTRITY-LLHVMYYTRITYL 105


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,337,974
Number of Sequences: 59808
Number of extensions: 334700
Number of successful extensions: 731
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 697
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2010148439
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)