Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0269
         (745 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g13990.1 68417.m02164 exostosin family protein contains Pfam ...    29   3.3  
At1g61750.1 68414.m06964 expressed protein contains Pfam profile...    28   7.5  
At4g32810.1 68417.m04667 dioxygenase-related low similarity to b...    27   9.9  

>At4g13990.1 68417.m02164 exostosin family protein contains Pfam
           profile: PF03016 exostosin family
          Length = 521

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = -1

Query: 304 IYTDNIQSNSKRN*RNRYYKSVLLFFIHTFIYLCFQITAI 185
           I T   ++N+  N  N ++  V LFFI  F+ LCF  +A+
Sbjct: 15  ITTGKFRTNNNNNHNNVWFV-VPLFFILCFVLLCFDYSAL 53


>At1g61750.1 68414.m06964 expressed protein contains Pfam profile:
           PF01657 domain of unknown function
          Length = 352

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 11/32 (34%), Positives = 22/32 (68%)
 Frame = -2

Query: 492 IYYVFYIISLKYFLY*ILHLVYYKRLSYLKTL 397
           IY++F++I++K +L  I  ++Y   LS + T+
Sbjct: 301 IYHIFFLINIKTYLIYITWIIYLFLLSTIGTI 332


>At4g32810.1 68417.m04667 dioxygenase-related low similarity to
           b,b-carotene-9',10'-dioxygenase [Mus musculus]
           GI:12666529; contains Pfam profile PF03055: Retinal
           pigment epithelial membrane protein
          Length = 570

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 666 DGNSIVIIIKCCKHLANTYTIFLL 737
           DG + VII  CC+H A+T  + +L
Sbjct: 384 DGKATVIIADCCEHNADTRILDML 407


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,986,223
Number of Sequences: 28952
Number of extensions: 231370
Number of successful extensions: 495
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 494
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1643603136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)