Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0267
         (539 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2 alpha-1,...    29   0.58 
SPBC119.09c |||ORMDL family protein|Schizosaccharomyces pombe|ch...    27   2.3  
SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces po...    26   4.1  
SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual     26   4.1  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   7.2  
SPCC1281.08 |wtf11|meu24|wtf element Wtf11|Schizosaccharomyces p...    25   9.5  

>SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2
           alpha-1,3-glucosyltransferase Alg12 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 546

 Score = 28.7 bits (61), Expect = 0.58
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 117 LIFVSIFYISIYCILDHVVWQILI 46
           LI+V +F+I +Y  L H  W+ +I
Sbjct: 284 LIYVPLFFIFVYSFLGHKEWRFII 307


>SPBC119.09c |||ORMDL family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 186

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 393 QYGPHARVLLAVSLVYFSRNTHRLHY 316
           QY P  + LL + ++ F  +TH  HY
Sbjct: 115 QYTPARKYLLVLPIILFLMSTHYTHY 140


>SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 549

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 345 NTREKRQEVRERGVHTADTLLPARR 419
           N REKRQE+ E  V+    +L  R+
Sbjct: 53  NRREKRQELAEEAVYCRSEMLSQRK 77


>SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 554

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 11/17 (64%), Positives = 15/17 (88%)
 Frame = +3

Query: 144 ILISLLISFIVKIKDLI 194
           ILI LLISFI ++KD++
Sbjct: 523 ILIPLLISFIKEVKDML 539


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -2

Query: 412 AGSSVSAVWTPRSRTSCRFSRVFQQEYSST 323
           +GSS S+ +TP S TS   S V  ++ SS+
Sbjct: 740 SGSSSSSSYTPASSTSTTTSSVSSRQSSSS 769


>SPCC1281.08 |wtf11|meu24|wtf element Wtf11|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 264

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -3

Query: 117 LIFVSIFYISIYCILDHVVWQIL 49
           L+FV +  ISI CI D V++  L
Sbjct: 107 LLFVFVISISIVCIFDLVIFGCL 129


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,896,820
Number of Sequences: 5004
Number of extensions: 33953
Number of successful extensions: 83
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)