Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0267
         (539 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6954| Best HMM Match : RVT_1 (HMM E-Value=0)                        31   0.80 
SB_40870| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_45116| Best HMM Match : EGF (HMM E-Value=0)                         28   5.6  
SB_41989| Best HMM Match : RVT_1 (HMM E-Value=1.2e-33)                 28   5.6  
SB_16012| Best HMM Match : Glyco_hydro_20 (HMM E-Value=0)              27   7.4  
SB_51269| Best HMM Match : PAE (HMM E-Value=8.9e-05)                   27   9.8  

>SB_6954| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 943

 Score = 30.7 bits (66), Expect = 0.80
 Identities = 28/99 (28%), Positives = 43/99 (43%)
 Frame = +2

Query: 119 FLNKCLKRDLNFPVNQFYS*DKRFNIKSFRTVSRRERSSLLVDFPIYFLRKLQCLSAQY* 298
           F+ KCL    N P++ ++       + S R  S R RSSL +  P+Y   K +     + 
Sbjct: 520 FMYKCLNGHYNIPLSHYFK-----PLPSLR--SSRHRSSLDIATPLY---KTKLFQNSFF 569

Query: 299 TRITRA*WSR*VFLLKYTRETARSTRAWGPYCRYTAARP 415
            RI +  WS  +   +YT E   +   W   CR   + P
Sbjct: 570 DRIPKNTWSA-LVNKEYTDEQINNFN-WDDRCRLIQSDP 606


>SB_40870| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 431

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +1

Query: 400 HCCPPEELERRAESTHHYCGVFTDELLAP 486
           HC P + L +R  +T+HY   F++  + P
Sbjct: 35  HCLPAQALSQRKRNTNHYYWRFSNNTVTP 63


>SB_45116| Best HMM Match : EGF (HMM E-Value=0)
          Length = 2023

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = +2

Query: 428 DALRARTTTAACSPTNCWRRSRNWPT 505
           D LR  T  A C+  NC RRSR   T
Sbjct: 405 DRLRQATRGAVCNTENCVRRSRKLAT 430


>SB_41989| Best HMM Match : RVT_1 (HMM E-Value=1.2e-33)
          Length = 585

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 16/59 (27%), Positives = 27/59 (45%)
 Frame = +1

Query: 250 SDLFSKKTAMSKRTVLNENYKGIVESMSIPAEIHERNGKKYASVGSILPIHCCPPEELE 426
           +D+ S    +  R  L +N+ G     +I  +  ++  +K     S LPI CC P + E
Sbjct: 30  ADVASDHHLIVARLKLKKNWTGGSSHNTITLKDSKKKEEKIPPADSDLPIECCAPTKEE 88


>SB_16012| Best HMM Match : Glyco_hydro_20 (HMM E-Value=0)
          Length = 1788

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +2

Query: 440 ARTTTAACSPTNCWRRSRNWPTLDWTRILVRRS 538
           A+  T   +P +CW+  R  PT++  R+  RR+
Sbjct: 46  AQLKTTTMAPHSCWKTIRPTPTINGFRMAGRRN 78


>SB_51269| Best HMM Match : PAE (HMM E-Value=8.9e-05)
          Length = 533

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 15/28 (53%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
 Frame = -3

Query: 150 LRSRFKHLFKNLIFVSIFYI--SIYCIL 73
           LRSR K LFKN  FV  F +  ++Y IL
Sbjct: 123 LRSRLKSLFKNGYFVEPFSVTSAVYIIL 150


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,967,835
Number of Sequences: 59808
Number of extensions: 253161
Number of successful extensions: 665
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 664
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1227799733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)