Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0266
(782 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_05_0078 - 18906900-18907082,18907104-18907337,18907429-189076... 53 2e-07
04_01_0435 + 5693035-5693669,5694999-5695241,5695806-5696007,569... 33 0.19
06_02_0103 - 11829343-11829699,11831560-11831826,11832239-118325... 33 0.34
04_01_0437 + 5704279-5704788,5705133-5705207 31 1.0
04_04_1263 - 32207636-32207938,32208020-32208170,32208263-322085... 30 2.4
04_01_0430 + 5651326-5651820,5651886-5652124,5652265-5652507,565... 30 2.4
02_01_0068 + 488943-490457 29 5.5
12_01_0489 + 3872495-3872538,3872663-3872741,3872835-3872914,387... 28 7.3
10_08_0607 + 19168164-19168358,19168594-19168716,19168791-191689... 28 9.6
03_05_0619 - 26180980-26181105,26181329-26181417,26181518-261816... 28 9.6
>11_05_0078 -
18906900-18907082,18907104-18907337,18907429-18907653,
18907739-18907909,18907994-18908109,18908215-18908369,
18908450-18908573,18909007-18909107,18909215-18909297,
18909383-18909607,18909694-18909810,18910488-18910640
Length = 628
Score = 53.2 bits (122), Expect = 2e-07
Identities = 31/95 (32%), Positives = 51/95 (53%)
Frame = +3
Query: 210 PPPTNPILFKSATKLADMIRKKQITSEEVVSAFIERCKEVNPYVNAVIEPRYEVALREAR 389
P I F S +L ++IR KQ+TS E+ + F+ R K P + +VI ++A ++A+
Sbjct: 155 PSKDEDIAFMSIIELGELIRTKQVTSRELTAVFLRRLKRYGPIIESVITITDDLAYKQAK 214
Query: 390 GIDKMIKSTDRTPEELEQEYPLLGIPLTIKESIAV 494
D ++ E+ + PL GIP +K+ IAV
Sbjct: 215 EADDLL-------EQGKYLGPLHGIPYGLKDIIAV 242
>04_01_0435 +
5693035-5693669,5694999-5695241,5695806-5696007,
5696188-5696583
Length = 491
Score = 33.5 bits (73), Expect = 0.19
Identities = 22/77 (28%), Positives = 42/77 (54%)
Frame = +3
Query: 279 ITSEEVVSAFIERCKEVNPYVNAVIEPRYEVALREARGIDKMIKSTDRTPEELEQEYPLL 458
+TS +V ++++ +NP ++AVIE + + AR D+ ++T R + PL
Sbjct: 41 LTSTALVRFYLDQITRLNPLLHAVIEVNPDALAQAARADDE--RATGR------RCGPLH 92
Query: 459 GIPLTIKESIAVEGMSN 509
G+P+ +K++IA N
Sbjct: 93 GVPVLLKDNIATRDRLN 109
>06_02_0103 -
11829343-11829699,11831560-11831826,11832239-11832559,
11833783-11833844,11835413-11835446,11835539-11835619
Length = 373
Score = 32.7 bits (71), Expect = 0.34
Identities = 29/84 (34%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Frame = +3
Query: 114 FMRRFLRFLVSLLAIIVVPVSYFS-SFKRKRKCPPPTNPIL--FKSATKLADMIRKKQIT 284
F + F+RFL SL A +VP S KR P T I + T L+DM + I+
Sbjct: 201 FRKDFMRFL-SLRAQEIVPGGRMVVSLLVKRSDKPDTELIQPWTPAVTALSDMALRGVIS 259
Query: 285 SEEVVSAFIERCKEVNPYVNAVIE 356
E++ S +I C ++ VN +IE
Sbjct: 260 KEKLDSFYIPLCCPMDSEVNNIIE 283
>04_01_0437 + 5704279-5704788,5705133-5705207
Length = 194
Score = 31.1 bits (67), Expect = 1.0
Identities = 24/77 (31%), Positives = 39/77 (50%)
Frame = +3
Query: 279 ITSEEVVSAFIERCKEVNPYVNAVIEPRYEVALREARGIDKMIKSTDRTPEELEQEYPLL 458
+TS +V +++R +NP ++AVIE + AL +A D S R PL
Sbjct: 44 LTSTALVRFYLDRVARLNPLLHAVIEVNPD-ALAQAARADAERASGRR------GFGPLH 96
Query: 459 GIPLTIKESIAVEGMSN 509
G+P+ +K++IA N
Sbjct: 97 GVPVLLKDNIATRDRLN 113
>04_04_1263 - 32207636-32207938,32208020-32208170,32208263-32208500,
32208604-32208814,32208927-32209108,32209196-32209297,
32210002-32211187,32212103-32212499,32212551-32212582,
32212885-32213157,32213307-32213394,32213486-32213723,
32213824-32214034,32214119-32214300,32214378-32214479,
32214801-32216224,32216751-32216822,32217688-32217719,
32218186-32218263,32218425-32218512,32218608-32218845,
32219060-32219162,32219386-32219558,32219644-32219745,
32219825-32220606,32220659-32221012,32224055-32224140,
32224250-32224400,32224534-32224771,32224876-32225119,
32225190-32225368,32225577-32225675,32225835-32227083
Length = 3195
Score = 29.9 bits (64), Expect = 2.4
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -1
Query: 626 HNWGCTGYSYGNCTSRSGLPDNSRVFLGWI 537
HN CT Y+Y N ++ S + D SR L W+
Sbjct: 2748 HNCSCTAYAYANLSTASMMGDTSRC-LVWM 2776
>04_01_0430 +
5651326-5651820,5651886-5652124,5652265-5652507,
5653159-5653360,5653679-5654035
Length = 511
Score = 29.9 bits (64), Expect = 2.4
Identities = 20/77 (25%), Positives = 41/77 (53%)
Frame = +3
Query: 279 ITSEEVVSAFIERCKEVNPYVNAVIEPRYEVALREARGIDKMIKSTDRTPEELEQEYPLL 458
+TS +V +++R +NP ++AVIE + + AR + ++T R + P+
Sbjct: 40 LTSTTLVRFYLDRIARLNPLLHAVIEVNPDALAQAARADAE--RATGR------RCGPMH 91
Query: 459 GIPLTIKESIAVEGMSN 509
G+P+ +K+++A N
Sbjct: 92 GVPVLLKDNMATRDRLN 108
>02_01_0068 + 488943-490457
Length = 504
Score = 28.7 bits (61), Expect = 5.5
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +3
Query: 126 FLRFLVSLLAIIVVPVSYFSSFKRKRKCPPPTNPILF 236
FL F +SL+A+++ S K + PP +P+LF
Sbjct: 7 FLLFSISLVAVLLATARRRRSSSIKARLPPGPSPLLF 43
>12_01_0489 +
3872495-3872538,3872663-3872741,3872835-3872914,
3873888-3874007,3874090-3874159,3874238-3874311,
3874393-3874513,3874600-3874662,3874748-3874807,
3875156-3875281,3875358-3875441,3875912-3876010
Length = 339
Score = 28.3 bits (60), Expect = 7.3
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Frame = +3
Query: 231 LFKSATKLADMIRKKQITSEEVVSAFIERCKE-----VNPYVNAVIEPRYEVALREARGI 395
LF S+ D+I E+VV + + CK N VN +I Y V+ ++ +
Sbjct: 222 LFGSSISSTDLISVSGAIPEDVVKSLLASCKSGEFDVANKEVNNIIADGYPVSQLISQFL 281
Query: 396 DKMIKSTDRTPEE 434
D +I + D P+E
Sbjct: 282 D-VIVNADDIPDE 293
>10_08_0607 +
19168164-19168358,19168594-19168716,19168791-19168946,
19169129-19169314,19169467-19169583,19169721-19169774,
19169854-19169925,19170430-19170535,19170658-19170754,
19171090-19171184,19172318-19172420,19172699-19172886,
19174928-19175183,19177187-19177325
Length = 628
Score = 27.9 bits (59), Expect = 9.6
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = -1
Query: 632 FMHNWGCTGYSYGNCTSRSGLPDNSRVFLGWISIC 528
F+ WG T SY ++ PD++ L W +C
Sbjct: 312 FIRRWGTTVSSYDQEYLKNTTPDDTSSRLWWFQVC 346
>03_05_0619 -
26180980-26181105,26181329-26181417,26181518-26181629,
26181711-26181848,26182004-26182150,26182458-26182532,
26182627-26182668,26183033-26183152,26183806-26183880,
26184051-26184113,26184690-26184759,26184877-26185006,
26185097-26185328
Length = 472
Score = 27.9 bits (59), Expect = 9.6
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = -3
Query: 756 SPISDGGEEIKADSPPRRASS 694
+P +DGGEE +A+ P RR S+
Sbjct: 22 APAADGGEEQEAEPPARRPST 42
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,790,793
Number of Sequences: 37544
Number of extensions: 458728
Number of successful extensions: 1266
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1265
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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