Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0266
         (782 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g34880.1 68417.m04947 amidase family protein similar to pepti...    39   0.003
At1g07620.1 68414.m00817 GTP1/OBG family protein similar to SP|P...    34   0.092
At3g32896.1 68416.m04157 expressed protein ; expression supporte...    30   2.0  
At5g60270.1 68418.m07554 lectin protein kinase family protein co...    29   3.5  
At3g42100.1 68416.m04322 AT hook motif-containing protein-relate...    29   3.5  
At4g12280.1 68417.m01946 copper amine oxidase family protein con...    28   6.1  
At3g53360.1 68416.m05889 pentatricopeptide (PPR) repeat-containi...    28   6.1  
At1g44160.1 68414.m05100 DNAJ chaperone C-terminal domain-contai...    28   6.1  
At2g20410.1 68415.m02382 activating signal cointegrator-related ...    28   8.0  
At1g04000.1 68414.m00386 expressed protein Location of ESTs 203I...    28   8.0  

>At4g34880.1 68417.m04947 amidase family protein similar to peptide
           amidase [Stenotrophomonas maltophilia] GI:19744118;
           contains Pfam profile PF01425: Amidase
          Length = 466

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 22/81 (27%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
 Frame = +3

Query: 270 KKQITSEEVVSAFIERCKEVNPYVNAVIEPRYEVALR-EARGIDKMIKSTDRTPEELEQE 446
           +K++TS+++V  ++E   ++NP ++AVIE   +  ++ E    ++ +K+T + P      
Sbjct: 54  EKRLTSKQLVELYLEAISKLNPILHAVIETNPDALIQAEIADRERDLKNTTKLP------ 107

Query: 447 YPLLGIPLTIKESIAVEGMSN 509
             L G+P+ +K+SI+ +   N
Sbjct: 108 -ILHGVPVLLKDSISTKDKLN 127


>At1g07620.1 68414.m00817 GTP1/OBG family protein similar to
           SP|P20964 Spo0B-associated GTP-binding protein {Bacillus
           subtilis}; contains Pfam profile PF01018: GTP1/OBG
           family
          Length = 1016

 Score = 34.3 bits (75), Expect = 0.092
 Identities = 17/41 (41%), Positives = 24/41 (58%)
 Frame = +3

Query: 120 RRFLRFLVSLLAIIVVPVSYFSSFKRKRKCPPPTNPILFKS 242
           RRF+   +  L   +VPV Y  S+KR +K P   NP++F S
Sbjct: 494 RRFVGNKLMWLIRAIVPVRYLGSYKRPQKPPWMRNPVVFYS 534


>At3g32896.1 68416.m04157 expressed protein ; expression supported
           by SAGE
          Length = 160

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -3

Query: 765 SDPSPISDGGEEIKADSPPRRASSCTFRI 679
           ++P PISDG ++     P RR+S C+ R+
Sbjct: 96  TNPLPISDGDDDFDRFFPLRRSSRCSSRV 124


>At5g60270.1 68418.m07554 lectin protein kinase family protein
           contains Pfam domains, PF00069: Protein kinase domain,
           PF00139: Legume lectins beta domain, and PF00138: Legume
           lectins alpha domain
          Length = 668

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -1

Query: 575 GLPDNSRVFLGWISICVYRSAIIAHALNRYTFFDSK 468
           GLP+  R  + W+S C  RS++I     R T F S+
Sbjct: 546 GLPEAKRFLIKWVSECWKRSSLIDARDPRLTEFSSQ 581


>At3g42100.1 68416.m04322 AT hook motif-containing protein-related
           very low similarity to SP|Q9UUA2 DNA repair and
           recombination protein pif1, mitochondrial precursor
           {Schizosaccharomyces pombe}; weak hit to Pfam profile
           PF02178: AT hook motif
          Length = 1752

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +3

Query: 273 KQITSEEVVSAFIERCKEVNPYVNAVIEPRYEV 371
           KQ   +EV+ A IE   +VNPYV+   + R  +
Sbjct: 471 KQKLKKEVIEALIEMLNKVNPYVDKFRQARERI 503


>At4g12280.1 68417.m01946 copper amine oxidase family protein
           contains Pfam domain, PF01179: Copper amine oxidase,
           enzyme domain
          Length = 300

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
 Frame = +3

Query: 366 EVALREARG----IDKMIKSTDRTPEELEQEYPLLGIPLTIKESIAVEGMSNDCGTVYTN 533
           E  LRE R     + +M+ S       ++ E+   G+   ++  + + GM    GT Y N
Sbjct: 2   ETPLREVRPKVTLVVRMVASVGNYDYIIDYEFQTDGV---MRAKVGLSGMLMVKGTTYEN 58

Query: 534 RNPAKKD 554
           +N  KKD
Sbjct: 59  KNQVKKD 65


>At3g53360.1 68416.m05889 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 768

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
 Frame = -2

Query: 499 PSTAILSLIVSGIPNSGY---SCSNSSGVRSVDFIILSIPLASL 377
           P TA  ++I++G+ N+GY   + S  S +RS  FI  +I L SL
Sbjct: 334 PDTASWNVIIAGLANNGYADEAVSVFSQMRSSGFIPDAISLRSL 377


>At1g44160.1 68414.m05100 DNAJ chaperone C-terminal
           domain-containing protein contains Pfam profile PF01556:
           DnaJ C terminal region
          Length = 357

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 19/71 (26%), Positives = 33/71 (46%)
 Frame = +3

Query: 114 FMRRFLRFLVSLLAIIVVPVSYFSSFKRKRKCPPPTNPILFKSATKLADMIRKKQITSEE 293
           FM   +R   ++      P+ Y SS  +  K P PT   L  +  +L +   KK     +
Sbjct: 146 FMPTLMRSTTTVPRSFANPILYSSSSAKVAK-PSPTEKKLRCTLEELCNGCTKKIKIKRD 204

Query: 294 VVSAFIERCKE 326
           V+++  E+C+E
Sbjct: 205 VITSLGEKCEE 215


>At2g20410.1 68415.m02382 activating signal cointegrator-related
           similar to ASC-1 (GI:6581062) [Mus musculus]; similar to
           Activating signal cointegrator 1 (ASC-1) (Thyroid
           receptor interacting protein 4) (TRIP-4)
           (Swiss-Prot:Q15650) [Homo sapiens]
          Length = 339

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +3

Query: 183 SSFKRKRKCPPPTNPILFKSATKLADMIRKKQITSEEVVS 302
           +SFK K   P P +P   K  +    M  KK++ S++V S
Sbjct: 160 NSFKVKFPLPDPKDPFSLKPGSIPCTMQEKKELDSKQVTS 199


>At1g04000.1 68414.m00386 expressed protein Location of ESTs
           203I24T7, gb|H76794 and 203I24XP, gb|AA605510
          Length = 152

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +3

Query: 210 PPPTNPILFKSATKLADMIRKKQI 281
           PPP NPI  KS+T  A+ I   Q+
Sbjct: 48  PPPVNPISKKSSTAAAEPIGSNQL 71


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,350,855
Number of Sequences: 28952
Number of extensions: 372132
Number of successful extensions: 1056
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1021
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1055
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1755792000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)