Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0264
         (412 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr...    30   0.16 
SPBC725.04 |||oxalyl-CoA decarboxylase |Schizosaccharomyces pomb...    26   2.0  
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy...    25   6.1  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    24   8.0  

>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 703

 Score = 29.9 bits (64), Expect = 0.16
 Identities = 14/39 (35%), Positives = 24/39 (61%)
 Frame = -2

Query: 204 SSLNTNINKLRTSLRILFYYVFLNETIRTEIVYLIYNKV 88
           S+LNT +N+L +S+   F   FL  T++  +  L+Y K+
Sbjct: 460 STLNTFMNELNSSMTSAFGDTFLASTVQNVMNCLLYRKI 498


>SPBC725.04 |||oxalyl-CoA decarboxylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +1

Query: 220 RSLLGLFIIIIQNNGLYYRAKSRQIKGLTRSH 315
           R+ L L +I+I NNG+Y+   +   + L  +H
Sbjct: 462 RNQLDLLVIVINNNGVYHGLDTDAYETLRDNH 493


>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 991

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -3

Query: 395 CKQLLFYYEKCPIDSW 348
           C  LL+YY+ CP  +W
Sbjct: 622 CWVLLYYYQGCPSWTW 637


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -3

Query: 401  KNCKQLLFYYEKCPIDSWKNMDIFCR 324
            KN   LLF   K   D W+++D  CR
Sbjct: 981  KNSYLLLFASAKPDEDFWESIDTMCR 1006


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,553,601
Number of Sequences: 5004
Number of extensions: 29060
Number of successful extensions: 58
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 142254980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)